Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0968
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1150 + 9161058-9162722,9162837-9162920,9163095-9163199,916... 94 7e-20
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 93 1e-19
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 91 4e-19
12_01_0303 - 2287875-2289593 29 1.8
11_04_0064 - 13053642-13053791,13053845-13053915,13054123-130542... 29 2.4
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 29 2.4
01_01_0091 - 719842-720902,721042-721071,721521-722226 29 3.1
02_02_0545 - 11376016-11378307 28 4.1
06_01_0517 - 3746253-3746790,3747651-3748201 28 5.4
10_07_0107 - 12936839-12937030,12937305-12937386,12937476-129375... 27 7.2
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782... 27 9.5
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 27 9.5
03_05_0147 - 21268081-21268596 27 9.5
03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,654... 27 9.5
>01_01_1150 +
9161058-9162722,9162837-9162920,9163095-9163199,
9163310-9163418,9163956-9164107,9164210-9164356
Length = 753
Score = 93.9 bits (223), Expect = 7e-20
Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Frame = +2
Query: 242 HRLLSFLKGTQSSNPHNDYCQHFVDTGQRPQNYIRDVGLADRFEEYPKLRELIKLKDDLI 421
HR + S NDY Q+FVDTG RPQN+IR++ L E+YPKLRELI+ KD+++
Sbjct: 431 HRNSGPTRKAPSRGEQNDYSQNFVDTGMRPQNFIRELDLTSVAEDYPKLRELIQRKDEIV 490
Query: 422 AETATPPMYLKCDLKTFDLKD--MANKFDV 505
A +A+PPMY KCDL+ L KFDV
Sbjct: 491 ANSASPPMYYKCDLRQHVLSPEFFGTKFDV 520
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 93.5 bits (222), Expect = 1e-19
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Frame = +2
Query: 275 SSNPHNDYCQHFVDTGQRPQNYIRDVGLADRFEEYPKLRELIKLKDDLIAETATPPMYLK 454
S NDY Q+FVDTG RPQN+IR++ L E+YPKLRELI+ KD+++A++A+PPMY K
Sbjct: 445 SRGEQNDYSQNFVDTGMRPQNFIRELDLTSVAEDYPKLRELIQRKDEIVAKSASPPMYYK 504
Query: 455 CDLKTFDLKD--MANKFDV 505
CDL+ L KFDV
Sbjct: 505 CDLRQHVLSPEFFGTKFDV 523
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 91.5 bits (217), Expect = 4e-19
Identities = 43/79 (54%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Frame = +2
Query: 275 SSNPHNDYCQHFVDTGQRPQNYIRDVGLADRFEEYPKLRELIKLKDDLIAETATPPMYLK 454
S NDY Q+FVDTG RPQN+IR++ L E+YPKLRELI+ KDD+++ +A+ PMY K
Sbjct: 649 SRGEQNDYSQNFVDTGMRPQNFIRELELTSVVEDYPKLRELIQRKDDIVSNSASAPMYYK 708
Query: 455 CDLKTFDLKD--MANKFDV 505
CDLK L KFDV
Sbjct: 709 CDLKDHMLSPEFFGTKFDV 727
>12_01_0303 - 2287875-2289593
Length = 572
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +3
Query: 33 KMSEKLRELRERSQKRKKLLAQTLGVSSVSELRHALGSALDVPVKKQAVSGSGGEGD 203
KM K R++ +R LL+Q L V + E A G +K A SG GGEG+
Sbjct: 124 KMDRKARKM-QRLVASTALLSQELDVLAELEQAAAGGLRRSGTRRKGAASGGGGEGE 179
>11_04_0064 -
13053642-13053791,13053845-13053915,13054123-13054227,
13054269-13054275,13054614-13054906,13055064-13055142,
13055322-13055551,13055646-13055792,13055988-13056067,
13056318-13056651,13057155-13057227,13057727-13057750,
13058297-13058497
Length = 597
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 126 LRHALGSALDVPV-KKQAVSGSGGEGDKPTSKDQPDELVYTD 248
LR A+ +VP K V G EGD+ DQPD + TD
Sbjct: 190 LRSAMSKGFEVPPGKAYLVDGGEMEGDELWLDDQPDNIDPTD 231
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 359 ADRFEEYPKLRELIKLKDDLIAETATPPMYLKCDLKTFDLKDMANKFDVFRGTSS 523
A+R +L ++I + D E PP L+CDL+ + + + +G+SS
Sbjct: 315 AERIVSDSELDDIIGISDSSALEERDPPDALQCDLRPYQKQAFYWMMQLEKGSSS 369
>01_01_0091 - 719842-720902,721042-721071,721521-722226
Length = 598
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 56 TTREISKTKKASSTDIRCLECERIKTCAGFSSRR 157
T EI+ T A + C++CER + GFSS+R
Sbjct: 194 TFSEITFTWSAPNITDVCIDCERQQRLCGFSSQR 227
>02_02_0545 - 11376016-11378307
Length = 763
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 159 PVKKQAVSGSGGEGDKPTSKDQPDELVYTDSSHF*RARSHQILTMTIVSTLLTQVR 326
P ++A G G+GD+ + Y SS HQ T TI +L ++R
Sbjct: 594 PRARKAAGGGDGDGDRAVATSLSRYCAYLVSSAPELLPEHQYTTRTIAEAVLLELR 649
>06_01_0517 - 3746253-3746790,3747651-3748201
Length = 362
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +3
Query: 159 PVKKQAVSGSGGEGDKPTSKDQPDELVYTDSSH 257
P+++ AV+ +GG+G+ + D++++TD H
Sbjct: 151 PMEEGAVAVNGGDGEVVNPDNADDDVLWTDYEH 183
>10_07_0107 - 12936839-12937030,12937305-12937386,12937476-12937586,
12937667-12937918,12938004-12940237,12940328-12940525
Length = 1022
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 434 LQFPQLNRLSV**VHVISDIPQTCQRAQHL*YSFVASDLCQ 312
+ P +LSV IS+IP QR H VA+DLC+
Sbjct: 944 VHIPSQKKLSVRTGWPISEIPYIAQRFNHTTILNVAADLCR 984
>10_05_0011 -
7822847-7822880,7823653-7823754,7823859-7824106,
7824195-7824240,7824368-7825984,7826673-7826797,
7826915-7829083
Length = 1446
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 438 GVAVSAIKSSFSLMSSRNFGYSSNLSASPTSLI 340
G++ SA +SFS M + N G S + P++L+
Sbjct: 637 GISFSARGNSFSGMDAHNLGQSDQKTMGPSALL 669
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 27.1 bits (57), Expect = 9.5
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +3
Query: 33 KMSEKLRELRERSQKRKKLLAQTLGVSSVSELRHALGSALDVPVKKQAVSGSGGEGDKPT 212
K E L E E+ ++ K+ L Q LG+ + H A DV V QA S + P+
Sbjct: 148 KRREFLEEFHEKQEQVKEWL-QNLGIGEHMPVGHDEDEADDVNVPAQAEENSIRHRNVPS 206
Query: 213 SKDQP 227
S P
Sbjct: 207 SAVLP 211
>03_05_0147 - 21268081-21268596
Length = 171
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 102 LGVSSVSELRHALGSALDVPVKKQAV-SGSGGEGDKPTSKDQP 227
LGV++V+ R+A G + PV + G GG G P P
Sbjct: 64 LGVATVARRRNAAGGSGGGPVAGSSTWQGGGGSGGAPLGSGVP 106
>03_02_0222 +
6540095-6540099,6541215-6541339,6541440-6541766,
6541815-6543215,6543268-6543357,6543800-6544515,
6545549-6545707,6545877-6546186,6546794-6546861,
6547354-6547896
Length = 1247
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +3
Query: 141 GSALDVPVKKQAVSGSGGEGDKPTSKDQPDELVYTDSSHF*RARSHQILTMTIVSTLLTQ 320
G+ + K +A EG+ +V T S H+ R + L TIVS+L +
Sbjct: 536 GTVHEALQKLRAAGAFDKEGEMNIFVRISKSIVNTLSKHWTTTREAEFLASTIVSSLTEK 595
Query: 321 VRGHKTISEML 353
+ HK + L
Sbjct: 596 QQKHKKFLQFL 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,117,608
Number of Sequences: 37544
Number of extensions: 250635
Number of successful extensions: 908
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -