Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0968
(533 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81517-7|CAE11306.1| 329|Caenorhabditis elegans Hypothetical pr... 29 1.6
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 2.1
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 2.1
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 2.1
U50312-1|AAA92318.1| 285|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81143-6|CAI58649.1| 283|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical p... 27 8.5
Z73905-2|CAA98109.3| 529|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical pr... 27 8.5
AC024805-9|AAK39341.2| 237|Caenorhabditis elegans Hypothetical ... 27 8.5
>Z81517-7|CAE11306.1| 329|Caenorhabditis elegans Hypothetical
protein F28B1.8 protein.
Length = 329
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = -3
Query: 228 PVGPYWWVYLLHLRFQTQLVF*QVRLELNPAHVLIRSHSRHLMSVLEAFFVFEISRVVLL 49
P+G W ++ + + FQT L+F + + N V++ + + + +A+ F + + LL
Sbjct: 77 PLGILWTIFEVPIIFQTYLIFTSLLMVCNAILVMVENRYYQMFARNKAWHHFRLPYIFLL 136
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 108 VSSVSELRHALGSALDVPVKKQAVSGSGGEGDKPTSKD 221
V+ S R A GS + VP + S GGE D P+S D
Sbjct: 993 VADPSRTRGAAGSTVFVPAAEDIESRGGGEIDIPSSGD 1030
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 108 VSSVSELRHALGSALDVPVKKQAVSGSGGEGDKPTSKD 221
V+ S R A GS + VP + S GGE D P+S D
Sbjct: 1066 VADPSRTRGAAGSTVFVPAAEDIESRGGGEIDIPSSGD 1103
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 108 VSSVSELRHALGSALDVPVKKQAVSGSGGEGDKPTSKD 221
V+ S R A GS + VP + S GGE D P+S D
Sbjct: 1066 VADPSRTRGAAGSTVFVPAAEDIESRGGGEIDIPSSGD 1103
>U50312-1|AAA92318.1| 285|Caenorhabditis elegans Hypothetical
protein B0222.1 protein.
Length = 285
Score = 28.7 bits (61), Expect = 2.8
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = -3
Query: 501 SNLLAMSFRSKVLRSHFKYIGGVAVSAIKSS---FSLMSSRNFG--YSSNLSASPTS 346
S+LL S S+ L + + GG S +SS FS SSR+ G +SS+ S+ PTS
Sbjct: 7 SSLLLFSLLSQHLDAKGSFGGGRGSSGARSSSSSFSSSSSRSSGSSFSSSSSSRPTS 63
>Z81143-6|CAI58649.1| 283|Caenorhabditis elegans Hypothetical
protein ZK265.9 protein.
Length = 283
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 207 VYLLHLRFQTQLVF*QVRLELNPAHVLIRSHS 112
V L +L F T L F + R+EL+ + L++ HS
Sbjct: 46 VALFYLAFVTVLSFIESRIELDSTYYLVQKHS 77
>Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical
protein K08E3.6 protein.
Length = 681
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 323 QRPQNYIRDVGLADRFEEYPKLRELIK 403
QRPQ I+D+G+ +E +LR+L K
Sbjct: 26 QRPQFDIKDIGMFHLIDEIERLRKLWK 52
>Z73905-2|CAA98109.3| 529|Caenorhabditis elegans Hypothetical
protein C32C4.1 protein.
Length = 529
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 365 RFEEYPKLRELIKLKDDLIAETATPPMYLKCDLKTFDLKDMANKF 499
RF YP+ R+ +K ++I + P YL+ L F ++ +F
Sbjct: 311 RFTIYPRKRQFVKKTLNIIDLSTILPFYLEICLPLFGVESRLKEF 355
>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical
protein T21C9.2 protein.
Length = 1058
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 39 SEKLRELRERSQKRKKLLAQTLGVSSVSE 125
S+K+ E+ ER +++KKLLA+ +S + E
Sbjct: 369 SKKIVEVHERYEQKKKLLAKLHDISCLRE 397
>Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical
protein ZK632.5 protein.
Length = 824
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 254 RGVGVYKFIRLVLTGGFISFTSASRHSLFFNRYV 153
+ + ++F++L T +I RHS F NRYV
Sbjct: 550 KSIKFFEFLKLFFTSAYIHM----RHSTFLNRYV 579
>AC024805-9|AAK39341.2| 237|Caenorhabditis elegans Hypothetical
protein Y51H7C.10 protein.
Length = 237
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 90 LAQTLGVSSVSELRHALGSALDVPVKKQAVSGSGGEGDK 206
L Q + SS+SELRH L A+ ++ + G+ +G+K
Sbjct: 29 LLQEIVDSSMSELRHRLQEAVFATSFRRKILGNSEKGEK 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,441,539
Number of Sequences: 27780
Number of extensions: 225505
Number of successful extensions: 748
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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