Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0967
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    38   0.002
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    37   0.002
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    37   0.002
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    33   0.029
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.6  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   7.8  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   7.8  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = +2

Query: 86  KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKVP 259
           K  + PKR MSA+M +    RE++K++NP     ++    G+ WK +   ++  +E+K  
Sbjct: 11  KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKAR 70

Query: 260 RPRSNMQK 283
           + +   ++
Sbjct: 71  QDKERYER 78


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +2

Query: 68  AIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS 223
           ++RK    T++  RP +A++L+       +   NP +  ++++K  GE+W++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +2

Query: 68  AIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS 223
           ++RK    T++  RP +A++L+       +   NP +  ++++K  GE+W++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
 Frame = +2

Query: 74  RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR---VTEIAKKGGEIWKSMK--DKT 238
           ++K +   +PKRP SAY L+  + R +IK E+ G +   V E+ K   E W S+   D+ 
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHEKWGSLSEDDRK 166

Query: 239 EWEQKVPRPR 268
            +E++  + R
Sbjct: 167 TYEEEASKLR 176


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/82 (24%), Positives = 39/82 (47%)
 Frame = -2

Query: 285 VFCILLLGLGTFCSHSVLSFIDFQISPPFLAISVTLKPGFSDFICSLALFNHSMYADIGR 106
           ++ ILL  L    ++ V +F  F+       +  ++    +  +C  A+++H  Y D+  
Sbjct: 17  IYNILLFNLFPLATYLVETFCFFRRWKIACTLLCSITVILAYRMC--AVYHHVGYKDVST 74

Query: 105 FGLSVILTFFLMAKILK*FLNW 40
           FGL+    F +M  +   FL+W
Sbjct: 75  FGLA--YGFLIMMSLRTCFLSW 94


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 591 NCNWYFVYKMPLNIHFLIPYS 653
           NCN YF  +MP  I+F   YS
Sbjct: 384 NCNLYFNPEMPTTIYFWKIYS 404


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 564 HLMRVGIIFNCNWYFVYKMPLNIH 635
           H  + G IF CN++ +Y++ L+IH
Sbjct: 157 HCRKCGYIF-CNFHSMYQIKLSIH 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,913
Number of Sequences: 5004
Number of extensions: 42723
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)