Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0967
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 60 1e-09
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 57 1e-08
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 57 1e-08
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 55 6e-08
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 48 8e-06
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 45 4e-05
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 44 1e-04
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 40 0.002
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 40 0.002
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 40 0.002
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 40 0.002
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 40 0.002
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 40 0.002
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 40 0.002
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 40 0.002
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 40 0.002
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 36 0.027
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 33 0.15
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 33 0.15
AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical ... 30 1.4
AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical... 30 1.4
Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical p... 29 3.1
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical pr... 29 3.1
AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A ... 29 3.1
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 29 3.1
AC024759-6|AAP13761.1| 527|Caenorhabditis elegans Hypothetical ... 29 3.1
Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical pr... 28 5.5
AL132902-7|CAB81993.1| 485|Caenorhabditis elegans Hypothetical ... 28 7.2
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 28 7.2
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 27 9.6
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL117202-21|CAB55087.1| 370|Caenorhabditis elegans Hypothetical... 27 9.6
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 27 9.6
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 60.1 bits (139), Expect = 1e-09
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +2
Query: 77 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEWEQ 250
KK K + PKR SAYM W ++R ++K + G V ++AKKGG WK+M DK +WE+
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKWEE 605
Query: 251 KVPRPRSNMQK 283
K +S +K
Sbjct: 606 KAEEDKSRYEK 616
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/58 (43%), Positives = 35/58 (60%)
Frame = +2
Query: 80 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQK 253
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DK+ WE+K
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKK 76
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/58 (43%), Positives = 35/58 (60%)
Frame = +2
Query: 80 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQK 253
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DK+ WE+K
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKK 76
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 54.8 bits (126), Expect = 6e-08
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +2
Query: 77 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEWEQ 250
KK K ++PKR +AY++W N+ R +K + G + ++AKK G WKSM DK EW
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEWND 610
Query: 251 KVPRPRSNMQ 280
K + ++ +
Sbjct: 611 KAAQDKARYE 620
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/50 (38%), Positives = 33/50 (66%)
Frame = +2
Query: 86 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 235
K D+ KRPM+A+M+W R+++ ENP + +EI+K+ G WK + ++
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +2
Query: 95 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 235
D KRPM+A+M+W R ++ +NP + +EI+K+ G WK + ++
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +2
Query: 86 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKVP 259
K ++ KRPM+A+M+W R +I P + EI+K+ G W+S+ D E+K P
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTD----EEKAP 141
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 74 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 232
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 221
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 74 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 232
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 218
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 74 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 232
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 324
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 74 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 232
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Frame = +2
Query: 74 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE--W 244
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+ +
Sbjct: 124 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMY 183
Query: 245 EQK 253
EQK
Sbjct: 184 EQK 186
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 116 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 232
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 49 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Frame = +2
Query: 74 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE--W 244
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+ +
Sbjct: 123 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMY 182
Query: 245 EQK 253
EQK
Sbjct: 183 EQK 185
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 116 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 232
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Frame = +2
Query: 74 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE--W 244
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+ +
Sbjct: 125 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMY 184
Query: 245 EQK 253
EQK
Sbjct: 185 EQK 187
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 116 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 232
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 74 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 232
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Frame = +2
Query: 74 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE--W 244
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+ +
Sbjct: 125 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMY 184
Query: 245 EQK 253
EQK
Sbjct: 185 EQK 187
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 116 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 232
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 35.9 bits (79), Expect = 0.027
Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 101 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD--KTEWEQKVPRPRSN 274
P+RP+ YM + ++++ENP ++ +I K G+ W + D K+ ++ + +++
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYELEKAD 85
Query: 275 MQK 283
+K
Sbjct: 86 YEK 88
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 89 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 235
MT K + S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 89 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 235
MT K + S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 89 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 235
MT K + S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 123
>AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical
protein Y45G12C.8 protein.
Length = 287
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 201 FLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTFFL 73
FLA+ + FS F C A N SM +FGL I+ FF+
Sbjct: 17 FLALYLNSFILFSIFYCKRAHVNRSMILIYFKFGLDAIIMFFM 59
>AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical
protein Y19D10A.17 protein.
Length = 141
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 201 FLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTFFL 73
FLA+ + FS F C A N SM +FGL I+ FF+
Sbjct: 17 FLALYLNSFILFSIFYCKRAHVNRSMILIYFKFGLDAIIMFFM 59
>Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 146 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKVPR 262
RE + E + V ++ +WK +K KTEW K R
Sbjct: 586 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKR 624
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 146 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKVPR 262
RE + E + V ++ +WK +K KTEW K R
Sbjct: 407 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKR 445
>Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 146 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKVPR 262
RE + E + V ++ +WK +K KTEW K R
Sbjct: 586 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKR 624
>AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A
protein protein.
Length = 657
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 146 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKVPR 262
RE + E + V ++ +WK +K KTEW K R
Sbjct: 586 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKR 624
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 146 REQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKVPR 262
RE + E + V ++ +WK +K KTEW K R
Sbjct: 407 REVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKR 445
>AC024759-6|AAP13761.1| 527|Caenorhabditis elegans Hypothetical
protein Y37E11AR.5 protein.
Length = 527
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 677 HYNXRKIKGIWNQEMNI*WHFINKIPV 597
HY K IWN +I W F+N P+
Sbjct: 231 HYEKGKAPKIWNLVSDITWFFVNSDPI 257
>Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical
protein F36G9.7 protein.
Length = 280
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 215 WKSMKDKTEWEQKVPRPRSNMQKT 286
WK D +E K PRPRS+++K+
Sbjct: 96 WKHKFDALNFEVKFPRPRSSIRKS 119
>AL132902-7|CAB81993.1| 485|Caenorhabditis elegans Hypothetical
protein Y71A12B.8 protein.
Length = 485
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +2
Query: 452 PNLKTLLFILNKDLIYYKVNGTDFPKSV*N 541
PNLK LLFIL K YY+ TD K+ N
Sbjct: 367 PNLKDLLFIL-KSFDYYEKYTTDIMKAFGN 395
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 80 KVKMTDKPKRPMSAYMLWLNSAREQIKSE--NPGLRVTEIAKKGGEIWKSMKDKTE 241
K K D K+P++A+M ++ R+ + E N + E+ K+ G+ W + + +
Sbjct: 184 KAKKDDHVKKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQ 239
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 74 RKKVKMTDKP-KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 226
R KV + +RPM+A+M++ R + + P ++K GE W S+
Sbjct: 833 RSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 884
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 74 RKKVKMTDKP-KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 226
R KV + +RPM+A+M++ R + + P ++K GE W S+
Sbjct: 833 RSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 884
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 74 RKKVKMTDKP-KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 226
R KV + +RPM+A+M++ R + + P ++K GE W S+
Sbjct: 68 RSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 119
>AL117202-21|CAB55087.1| 370|Caenorhabditis elegans Hypothetical
protein Y47D3A.27 protein.
Length = 370
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Frame = +2
Query: 173 GLRVTEIAKKGGEIWKSMKDKTEWEQKVPRP--------RSNMQKT*NLTMPMAVVAKGA 328
G+ + + KK G+ W+ +DK E + P P + ++ NL P VAK
Sbjct: 128 GIDWSLVKKKAGDQWEGDEDKKSLEDEEPEPITMSDARKKEIFEQLVNLLKPNQTVAKAL 187
Query: 329 KRRLKNEG 352
K +G
Sbjct: 188 SELKKKKG 195
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 279 CILLLGLGTFCSHSVLSFIDFQISPPFLAISVTLKPGF 166
C+ +L L + SF+ F S P + +KPGF
Sbjct: 147 CMAILQLSIAAVANYYSFLSFPFSQPVMNYCTAVKPGF 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,169,693
Number of Sequences: 27780
Number of extensions: 243055
Number of successful extensions: 744
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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