Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0955
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 112 3e-25
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 28 5.4
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 28 5.4
U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule abnor... 28 5.4
U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule abnor... 28 5.4
AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein. 28 5.4
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 27 9.5
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 27 9.5
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 112 bits (269), Expect = 3e-25
Identities = 52/84 (61%), Positives = 56/84 (66%)
Frame = +3
Query: 258 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 437
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRY 121
Query: 438 XXXXXXXXXXXXXXXQARGHIIEK 509
QARGH+I++
Sbjct: 122 AVSSAIAASGIPALLQARGHVIDQ 145
Score = 78.2 bits (184), Expect = 5e-15
Identities = 35/61 (57%), Positives = 47/61 (77%)
Frame = +2
Query: 506 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGXGKMRNRRRIQRK 685
++ E+PLVV+DKV+ KTK+AV+FLRR W+DI KVY S+R RAG GK+RNR+ Q+
Sbjct: 145 QVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKL 204
Query: 686 G 688
G
Sbjct: 205 G 205
Score = 58.0 bits (134), Expect = 6e-09
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +1
Query: 79 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 255
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQ 60
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +2
Query: 251 TNQC--RIMGYRTCCCPNSAC 307
TN+C + G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +2
Query: 251 TNQC--RIMGYRTCCCPNSAC 307
TN+C + G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887
>U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule
abnormality protein 1,isoform a protein.
Length = 730
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +3
Query: 216 EAALLREQGGWSPTSAESWGTGRAVARIPRVRGG----GTHRSGQGAFGNMCRGGR 371
EA + + G ++PTS+ G G RGG G R G+G +G RGGR
Sbjct: 654 EAKVAKGFGQFAPTSSAYGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGR 709
>U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule
abnormality protein 1,isoform b protein.
Length = 771
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +3
Query: 216 EAALLREQGGWSPTSAESWGTGRAVARIPRVRGG----GTHRSGQGAFGNMCRGGR 371
EA + + G ++PTS+ G G RGG G R G+G +G RGGR
Sbjct: 695 EAKVAKGFGQFAPTSSAYGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGR 750
>AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein.
Length = 730
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +3
Query: 216 EAALLREQGGWSPTSAESWGTGRAVARIPRVRGG----GTHRSGQGAFGNMCRGGR 371
EA + + G ++PTS+ G G RGG G R G+G +G RGGR
Sbjct: 654 EAKVAKGFGQFAPTSSAYGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGR 709
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 127 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 26
P S +S N PT+K+ L I+ YF PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 366 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 283
HHD +++H + + HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,800,354
Number of Sequences: 27780
Number of extensions: 313746
Number of successful extensions: 1054
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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