Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0954
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 149 4e-37
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 149 5e-37
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 28 1.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 7.7
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 7.7
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 26 7.7
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 149 bits (362), Expect = 4e-37
Identities = 79/169 (46%), Positives = 99/169 (58%)
Frame = +3
Query: 24 MKLNVSYPATGMPEVVRSGGRAQASYLLRKAHXXXXXXXXXXXXMEGLCTSCRWRQRQAR 203
MKLN+SYPA G +++ + + K G +
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 204 IPDETGRPDKQPCSSSDSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 383
P G GH CYRPRRDGERKRKSVRGCIV +L+VLAL IV++G Q+
Sbjct: 61 FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120
Query: 384 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQPRKEKK 530
IPGLTD VP+RLGPKRASKIR+ FNLSKEDDVR++V++R + P+KE K
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169
Score = 91.9 bits (218), Expect = 1e-19
Identities = 46/86 (53%), Positives = 57/86 (66%)
Frame = +1
Query: 61 QKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 240
QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQGFPM QGVL R
Sbjct: 13 QKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHR 72
Query: 241 VRLLIQRATHVTDRAAMERENVNQFV 318
VRLL+ RA H R + E + V
Sbjct: 73 VRLLL-RAGHPCYRPRRDGERKRKSV 97
Score = 35.1 bits (77), Expect = 0.013
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +2
Query: 494 RQTRAPAKEGKENAKPRHKAPKIQRLVTP 580
R+ P KEGK KP KAPKIQRLVTP
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTP 184
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 149 bits (361), Expect = 5e-37
Identities = 78/169 (46%), Positives = 99/169 (58%)
Frame = +3
Query: 24 MKLNVSYPATGMPEVVRSGGRAQASYLLRKAHXXXXXXXXXXXXMEGLCTSCRWRQRQAR 203
MKLN+SYPA G +++ + + K G +
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 204 IPDETGRPDKQPCSSSDSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 383
P G GH CYRPRRDGERKRKSVRGCIV +L+VLAL I+++G Q+
Sbjct: 61 FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120
Query: 384 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQPRKEKK 530
IPGLTD VP+RLGPKRASKIR+ FNLSKEDDVR++V++R + P+KE K
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169
Score = 91.9 bits (218), Expect = 1e-19
Identities = 46/86 (53%), Positives = 57/86 (66%)
Frame = +1
Query: 61 QKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 240
QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQGFPM QGVL R
Sbjct: 13 QKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHR 72
Query: 241 VRLLIQRATHVTDRAAMERENVNQFV 318
VRLL+ RA H R + E + V
Sbjct: 73 VRLLL-RAGHPCYRPRRDGERKRKSV 97
Score = 35.1 bits (77), Expect = 0.013
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +2
Query: 494 RQTRAPAKEGKENAKPRHKAPKIQRLVTP 580
R+ P KEGK KP KAPKIQRLVTP
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTP 184
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Frame = +1
Query: 49 QRACQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVL 228
+RA LFE + Y +R+ + ++L EW G++ V D + + +L
Sbjct: 320 RRAPMDLFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLP-LNLSREML 378
Query: 229 TNSRV-----RLLIQRATHVTDRAAMERENVNQFVD 321
+++ + L++R + + A ++EN F D
Sbjct: 379 QQNKIMKVIRKNLVRRCLDMFNEIAEDKENFKTFYD 414
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -3
Query: 554 VPYVWV*HFLFLPWLEHAFDDITTYIIFFAKVEQLTDFGSTF 429
+ +V +FL L W FDD ++FF ++T++ F
Sbjct: 148 IAFVCSPNFLTLKWNSSLFDDDLARLLFFMINSKITNYDLPF 189
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 210 DETGRPDKQPCSSSDSKGHSCYRPRRDGERKRKSVRGCIVD 332
+E D P SK +S +P+ G KRK+ R +VD
Sbjct: 85 EEEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVD 125
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 11 IDRSHEVKRFVPGNGHARSCS-KWWTSTSFVSFTKS 115
ID S G+GHARS S WW V F K+
Sbjct: 94 IDNSLLAPPLSNGSGHARSRSHAWWLPYIVVEFDKN 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,765
Number of Sequences: 5004
Number of extensions: 62455
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -