Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0954
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 118 8e-27
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 116 2e-26
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 31 1.2
11_01_0125 + 1018059-1018403 29 6.2
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817... 28 8.1
05_04_0074 - 17677298-17677591,17679060-17679197,17682705-17683130 28 8.1
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 28 8.1
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 118 bits (283), Expect = 8e-27
Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 5/105 (4%)
Frame = +3
Query: 258 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 431
+G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPK
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPK 138
Query: 432 RASKIRKLFNLSKEDDVRRYV--VKRVLQPRKEKKMLN-PDIRHL 557
RASKIRKLFNLSK+DDVR+YV +R + KK+ P I+ L
Sbjct: 139 RASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRL 183
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/70 (61%), Positives = 53/70 (75%)
Frame = +1
Query: 58 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 237
CQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQGFPMKQGVLT
Sbjct: 12 CQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAG 71
Query: 238 RVRLLIQRAT 267
RVRLL+ R T
Sbjct: 72 RVRLLLHRGT 81
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 527 ENAKPRHKAPKIQRLVTPV 583
+N K KAPKIQRLVTP+
Sbjct: 169 KNGKKVSKAPKIQRLVTPL 187
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 661 YAKLLAQRKKXSKVRRQEEIKRXRS 735
Y KLLAQR K + RR E + + RS
Sbjct: 213 YQKLLAQRLKEQRERRSESLAKRRS 237
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 116 bits (279), Expect = 2e-26
Identities = 61/105 (58%), Positives = 76/105 (72%), Gaps = 5/105 (4%)
Frame = +3
Query: 258 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 431
+G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPK
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPK 138
Query: 432 RASKIRKLFNLSKEDDVRRYV--VKRVLQPRKEKKMLN-PDIRHL 557
RASKIRKLFNL+K+DDVR+YV +R + KK+ P I+ L
Sbjct: 139 RASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRL 183
Score = 100 bits (239), Expect = 2e-21
Identities = 44/70 (62%), Positives = 54/70 (77%)
Frame = +1
Query: 58 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 237
CQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQGFPMKQGVLT+
Sbjct: 12 CQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSG 71
Query: 238 RVRLLIQRAT 267
RVRLL+ R T
Sbjct: 72 RVRLLLHRGT 81
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 527 ENAKPRHKAPKIQRLVTPV 583
+N K KAPKIQRLVTP+
Sbjct: 169 KNGKKVSKAPKIQRLVTPL 187
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 661 YAKLLAQRKKXSKVRRQEEIKRXRS 735
Y KLLAQR K + RR E + + RS
Sbjct: 213 YQKLLAQRLKEQRERRSESLAKRRS 237
>09_04_0727 +
19765175-19765384,19765523-19765595,19766476-19766570,
19766666-19768450,19768533-19768721,19768816-19768958,
19769075-19769320,19769975-19770059,19770117-19770191,
19770304-19770369,19770466-19770712,19770824-19771242
Length = 1210
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 180 RWRQRQARIPDE-TGRPDKQPCSSSDSKGHSCYRPRRDGERKRKSVRG 320
R+R + ++ DE + RP ++ S+S S PRR+G R R+S+RG
Sbjct: 129 RYRSSKNKVDDEVSARPKRKKLSNSSSI------PRREGLRPRRSIRG 170
>11_01_0125 + 1018059-1018403
Length = 114
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 156 MEGLCTSCRWRQRQARIPDETGRPDKQPCSSSDSKGHSCYRPRRDGERKRKSVRGC 323
+EG+ RWR+ AR RP + S G + G K +++RGC
Sbjct: 57 VEGVGGRDRWRRGAARRGRRRQRPRDEKASGGRGGGADLGKDSGRGRTKNEALRGC 112
>06_03_0734 -
23980576-23980671,23980799-23981338,23981493-23981714,
23981791-23982144,23982460-23982546
Length = 432
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 231 KQPCSSSDSKGHSCYRPRRDGERKRK 308
K PCSS+ G C+ R + KR+
Sbjct: 14 KSPCSSAGGGGRGCHNERGSADHKRR 39
>05_04_0074 - 17677298-17677591,17679060-17679197,17682705-17683130
Length = 285
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 715 LPGDAP-WXPSFSVQAI*HIQPQKDLRLAKTLLLQSETMT 599
+PG+ + P+F Q + H+ PQ+DL L +L+ + T
Sbjct: 165 IPGNPVIFGPNFMAQILYHLSPQEDLTLGLSLIRPTNKFT 204
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 192 RQARIPDET--GRPDKQPCSSSDSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 365
++ +IP + GR +K+ S++D+ + PRR R + R C++D + + +
Sbjct: 629 QRGQIPSDALPGRTNKKRKSTADTS----FNPRRRTSRPENASRACVLDGSTTQNRFQFI 684
Query: 366 RKGAQ 380
R+ A+
Sbjct: 685 REEAE 689
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,854,352
Number of Sequences: 37544
Number of extensions: 459471
Number of successful extensions: 1390
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -