Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0953
         (785 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   3.7  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   3.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   8.4  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 427 AVQNAAITEGEEKKDDKAIEPPMDPNVRVSQ 519
           AVQ +++TEG+  K  K   P  D N   SQ
Sbjct: 65  AVQGSSLTEGKRSKRSK--RPNGDTNGDTSQ 93


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 260 RPSFTVKYMHSNAN 301
           +P FT KY H N N
Sbjct: 57  QPGFTGKYCHENIN 70


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 166 SPSCRSDGIPTPECSSANPRLENSS 240
           SPS     +PT   S++NP   + S
Sbjct: 76  SPSSTPSSLPTQRTSTSNPTYSSRS 100


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -2

Query: 322  EACKVFHICIRVHVL 278
            E+C  F++C+  H++
Sbjct: 1216 ESCSSFYVCVNGHLV 1230


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 504 CKGIPDFWYNIFRNVSMLSE 563
           C+G   F+   + N+S +SE
Sbjct: 22  CEGCKSFFGRTYNNISSISE 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,352
Number of Sequences: 336
Number of extensions: 3735
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)