Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0953
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    72   1e-13
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    67   2e-12
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    32   0.081
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   7.0  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   9.3  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   9.3  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 35/75 (46%), Positives = 43/75 (57%)
 Frame = +3

Query: 483 RASNGSQCKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYF 662
           +   G   KGIP+FW    +NV  LSEM+   DE  L  L DI++   E P  F LEF F
Sbjct: 154 KQEGGDDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEF 212

Query: 663 APNEYFTNTVLTKEY 707
           A N +FTN +LTK Y
Sbjct: 213 AENPFFTNKILTKTY 227



 Score = 31.5 bits (68), Expect = 0.14
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 170 LHAEAMASLPPNVRRRIRALRTLQKEFVALRPSFTVKYMH-SNANMKNFTSLFMK 331
           L +E ++ LP  V+RRI  LR LQK +  L   F  +      A  K +  +F +
Sbjct: 63  LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKR 117


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
 Frame = +3

Query: 507 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK-VQMHEDPISFTLEFYFAPNEYFT 683
           KGIP+FW     NV ++ EM+   DE +L+ L DI+   +  D   + LEF F  N+YFT
Sbjct: 164 KGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSNDYFT 223

Query: 684 NTVLTKEYLMKCKPDEESP 740
           N +LTK Y  K   D+ SP
Sbjct: 224 NKILTKTYYYK---DDLSP 239


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 32.3 bits (70), Expect = 0.081
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
 Frame = -3

Query: 606 LASILELVHHVLASFR*ALRHS*ICCTKSLGYPYIGIH-WRLDSLVILLFLTLSDGSI-- 436
           LAS++  V   +A F  +L +S    T  L   Y G+  + + ++ ILLF ++  G++  
Sbjct: 628 LASVMYYVAEQVAFF--SLGNSNSLATVDLSQAYTGLDSYNIFAVGILLFTSVFAGALWW 685

Query: 435 -LYRPS*LFFFSVITPWVETFIIIRFIC 355
            L++P  +   SV T W+ + I + F+C
Sbjct: 686 CLHQPKRMMDRSVKTFWIMSSISLTFLC 713


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 185 MASLPPNVRRRIRALRTLQKEFVALRPSFTVKYMHSNANMKNFTSLFM 328
           MA LPP    RI   +  +   ++L   F  KY+  N N+ N   +F+
Sbjct: 190 MAILPPMAALRILFYQYSKASTMSLTDDFYNKYVLENLNIINNLQIFL 237


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 113  HLLKSGVTRNEMIAAITNRLHAEAMASLP 199
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 122 KSGVTRNEMIAAITNRLHAEAMASLPPNVRRRIRALRTLQKEFVALRPSFTVKYMHSNAN 301
           K  +T NE    + N +  +   S   N +R++   R  QK+F+   P+F  +    +  
Sbjct: 620 KDALTINEFFT-LKNAVEKQDNVSFHVNKKRKVSQKREKQKKFLYDEPTFKKEASPHSDV 678

Query: 302 MKN 310
           +KN
Sbjct: 679 LKN 681


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 161 TNRLHAEAMASLPPNVRRRIRALRTLQKEFVALRPS 268
           ++++ + A+A LPP+++  I+    LQK  +   PS
Sbjct: 693 SSQISSSALAQLPPSMQSDIQQQLRLQKRSITEYPS 728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,982
Number of Sequences: 5004
Number of extensions: 61938
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)