Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0949
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    34   0.021
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    30   0.34 
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    28   1.8  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   2.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   9.6  

>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 34.3 bits (75), Expect = 0.021
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 204 SAKPST-LFNNANKNSLWKCTWSLLNSFLASPSNSSLVSFIRNHNFI*LKYFVDFSPSTS 28
           SA PS   F+N N N L +    L + FL+S  NSS V   R H F  L +++ FS  +S
Sbjct: 28  SATPSLEFFSNENTNRLSEVQCKLTH-FLSSSENSSSVRNTRTHKFKQLLHYIFFSNRSS 86


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
 Frame = -3

Query: 784 IGKLSSFVLDLGHCRQFQKQLNVPFHQL*EDIWE-------PRESTPSSTFT 650
           + + +  VL +G+     K  NV F  L +++W+       PR S+PSSTF+
Sbjct: 82  VARKAKLVLRIGNRDPISKLENVSFISLDQELWDEELFEPMPRNSSPSSTFS 133


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 315 YINWFKVTLLRGSRASLMSPMFLLCELAFSWAIVIEVSAKPSTLFNNAN 169
           Y  W     L  SRA+  +P        +S    +E S+K S LFN+AN
Sbjct: 66  YPKWSGALSLASSRAASPAPSDSFPTFGYSQLGGLENSSKGSALFNSAN 114


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 670 WIPSVPRCPPTIDEMEHSAVFEIACSAPNPEQMKTA 777
           W PS P     I  +  S VF +A +A +PE++K A
Sbjct: 45  WFPSYPNQANEILLLRPSLVFLLAEAAISPEELKVA 80


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 146 VHFHNEFLLALLNKVEGLAETSITIAQEKANS 241
           V F+N F LA  N VEG+  +S   +QE + S
Sbjct: 120 VGFNNNFGLAPRNYVEGMDASSAPASQEPSAS 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,309,324
Number of Sequences: 5004
Number of extensions: 70679
Number of successful extensions: 196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)