Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0949
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 35 0.088
02_01_0231 - 1537788-1537804,1537963-1538173 34 0.12
04_04_1437 + 33600282-33601562 34 0.15
04_03_0178 + 12298502-12298878,12298896-12298998,12299211-122992... 31 0.82
03_06_0058 - 31330067-31330978 31 1.1
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359... 29 3.3
04_03_0372 + 15068405-15070000 29 4.4
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 29 4.4
07_03_1526 + 27456426-27456700,27457936-27458023,27458129-274587... 28 7.6
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 34.7 bits (76), Expect = 0.088
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 41 EKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALLN 184
E+S YF+ +K + +L KEEFD + D + +HN + ++L+
Sbjct: 304 ERSEHYFHSLKKFLGGQLGKEEFDKICVATMGRDNIKYHNFLIRSILS 351
>02_01_0231 - 1537788-1537804,1537963-1538173
Length = 75
Score = 34.3 bits (75), Expect = 0.12
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 41 EKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALL 181
E+S +YF +K++ ++ K FD + + + + HN L+++L
Sbjct: 14 ERSERYFRYLKMFLGSRMEKSMFDRVVIQTIGRENIRLHNHLLMSVL 60
>04_04_1437 + 33600282-33601562
Length = 426
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 2 LNIARRKLNEVLG-EKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLAL 178
L + +L + LG ++S +YF+ +K + +L+K +FD + L + + HN+ + ++
Sbjct: 37 LREVKLQLEKRLGPDRSRRYFSYLKGYLSNRLSKADFDKVCLQTLGRENLRVHNQLIRSV 96
Query: 179 L 181
L
Sbjct: 97 L 97
>04_03_0178 +
12298502-12298878,12298896-12298998,12299211-12299271,
12299423-12299486,12299825-12299996,12300765-12300863
Length = 291
Score = 31.5 bits (68), Expect = 0.82
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 44 KSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALLN 184
++ KYF ++ + KL K EFD L + + HN + ++L+
Sbjct: 46 RAKKYFQHLERFLSSKLNKNEFDKLCLVTLGRENLPLHNHLIRSILH 92
>03_06_0058 - 31330067-31330978
Length = 303
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 14 RRKLNEVLG-EKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALL-NK 187
+++L + LG +++ +YF + +KLTK EFD + + + HN + ++ N
Sbjct: 16 KQRLVKRLGRQRAGQYFAHLTRLLNLKLTKVEFDKLCYATIGRENIALHNALIRGIISNA 75
Query: 188 VEGLAETS 211
+ G+ S
Sbjct: 76 LSGVPPPS 83
>06_01_0503 -
3596664-3596837,3597647-3598069,3598362-3598595,
3598720-3598993,3599390-3599523,3599572-3599634,
3599759-3599846,3599919-3599989,3600898-3601010,
3601836-3602004,3602580-3602671,3602819-3603295,
3603736-3604090
Length = 888
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 660 LHLPFPNSEDRIVWLSFSATYSACHHQYRT*STSHEFCSLSFVLKQ 523
L L P S VW + + H ++R SH FCS SF + Q
Sbjct: 24 LALAVPPSRSLQVWSNLARRGELTHPRHRRFHRSHRFCSGSFCVLQ 69
>04_03_0372 + 15068405-15070000
Length = 531
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 304 PVDILEYLPPNSPPGAGSDGVKYATQEIFLPD 399
P + ++ LPP PP G G K+ + +FLP+
Sbjct: 164 PRESVQLLPPLPPPPGGGAG-KHVVERVFLPE 194
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -1
Query: 231 FSWAIVIEVSAKPSTLFNNANKNSLWKCTWSLLNSFLASPSNSSLVSF 88
F W + E P NNA+ NS+W W + L S N F
Sbjct: 378 FHWLVGHET---PQIEINNAHDNSVWDLAWHPVGYLLCSGGNDHATRF 422
>07_03_1526 +
27456426-27456700,27457936-27458023,27458129-27458725,
27458731-27460056,27460283-27460729
Length = 910
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 318 KYINWFKVTLLRGSRASLMSPMFLLCELAFSWAIVIEVSAKPSTLFNN 175
KY+ W L A+++ PMF++ +L S IV+++ A F N
Sbjct: 203 KYVFWRPFILYSCMLAAIVMPMFMIEKLYSSAIIVLDIYALVVVSFGN 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,100,313
Number of Sequences: 37544
Number of extensions: 450716
Number of successful extensions: 1208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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