Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0949
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.7  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 792 IHLLVSCLHLFWIWGTAGNFK 730
           ++ +V C+   WIWG  G  K
Sbjct: 154 LNTIVYCVPAGWIWGDQGFLK 174


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 570 MYDIGGDMPNMWLRNSAKLYDPQS 641
           +YD GG     W R   +L+D  S
Sbjct: 15  LYDEGGKHTVHWFRKGLRLHDNPS 38


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 248 RNIGDIREALEPLRRVTLNQLIYLSICRLIH 340
           RN  D+    EP  RV  +  +YL+  +LIH
Sbjct: 346 RNGADLETLNEPEIRVFNDGSLYLTKVQLIH 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,431
Number of Sequences: 438
Number of extensions: 5191
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)