Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0948
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical ... 103 8e-23
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 65 3e-11
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 57 1e-08
Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical pr... 47 1e-05
U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical p... 46 2e-05
Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 38 0.005
AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 38 0.005
U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula (ubiq... 34 0.074
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 31 0.69
Z96047-3|CAB09412.1| 207|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81485-2|CAB03974.2| 708|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 28 4.8
AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical ... 28 6.4
U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical pr... 27 8.4
>AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical
protein F42G8.6 protein.
Length = 402
Score = 103 bits (248), Expect = 8e-23
Identities = 57/128 (44%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Frame = +2
Query: 251 SKWAIERYSRQILLSDIGVEGQVKICSAKVLIXGAGGLGCPAAMYLAGAGIGEIGIVDYD 430
SK RYSRQ+L+ D GV GQ + + VLI GAGGLGCP A YL AGIG IGIVDYD
Sbjct: 11 SKKDAGRYSRQLLVDDFGVSGQKNLKNLNVLIVGAGGLGCPVATYLGAAGIGTIGIVDYD 70
Query: 431 AVDLTNVHRQLLHHESNENTSKAFSALSL*DV*TRKLKSH-HTTFSWTRRTLSKFASAYD 607
+ L N+HRQ+ + E SKA + + L H T + + F + Y+
Sbjct: 71 HISLDNLHRQVAYKEDQVGKSKAQALADNIKLQNSDLNVQVHNTSLDSSNAMQLFKN-YE 129
Query: 608 LVLDCSDN 631
+V DC+DN
Sbjct: 130 IVCDCTDN 137
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 65.3 bits (152), Expect = 3e-11
Identities = 35/111 (31%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Frame = +2
Query: 308 EGQVKICSAKVLIXGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNVHRQLLHHESNEN 487
E KI +K+L+ GAGG+GC LA G ++ ++D D +D++N++RQ L + + +
Sbjct: 6 EKHEKIVQSKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNRQFLFRKEHVS 65
Query: 488 TSKAFSALSL*DV*TRKLK---SHHTTFSWTRRTLSKFASAYDLVLDCSDN 631
+SKA +A + +++ H + F ++ +F AYD+VL+ DN
Sbjct: 66 SSKAATATQVVKQFCPQIELTFDHDSIFE--KKYNMEFFQAYDIVLNALDN 114
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/66 (40%), Positives = 40/66 (60%)
Frame = +2
Query: 302 GVEGQVKICSAKVLIXGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNVHRQLLHHESN 481
G E + + K+L+ GAGGLGC LA +G I ++D D +D++N++RQ L ES+
Sbjct: 33 GPENFEALQNTKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSNLNRQFLFRESD 92
Query: 482 ENTSKA 499
SKA
Sbjct: 93 VGKSKA 98
>Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical
protein C08B6.9 protein.
Length = 343
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +2
Query: 272 YSRQILLSDIGVEGQVKICSAKVLIXGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNV 451
Y RQI L G+E Q KI ++KVLI G LG A L+ AG+ E+ +VD+ VD +
Sbjct: 11 YDRQIRLW--GMEAQNKIRNSKVLIIGGKQLGAEVAKTLSLAGVDEMHLVDHRLVDTEEI 68
Query: 452 HRQLLHHESNENT 490
L+ S +N+
Sbjct: 69 GMNFLYDASVDNS 81
>U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical
protein T03F1.1 protein.
Length = 419
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +2
Query: 272 YSRQILLSDIGVEGQV-KICSAKVLIXGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTN 448
YSR + L +G+ + +I V + G GG+G A L GIG++ + DYD V++ N
Sbjct: 64 YSRLMALQRMGIVNEYERIREKTVAVVGVGGVGSVVAEMLTRCGIGKLILFDYDKVEIAN 123
Query: 449 VHRQLLHHESNENTSKAFSA 508
++R L + + SK +A
Sbjct: 124 MNR-LFYQPNQAGLSKVEAA 142
>Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/44 (47%), Positives = 23/44 (52%)
Frame = +2
Query: 335 KVLIXGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNVHRQLL 466
KVLI GAG LGC A L G G+ I +D V N RQ L
Sbjct: 326 KVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSL 369
>AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/44 (47%), Positives = 23/44 (52%)
Frame = +2
Query: 335 KVLIXGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTNVHRQLL 466
KVLI GAG LGC A L G G+ I +D V N RQ L
Sbjct: 326 KVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSL 369
>U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula
(ubiquitin activating)homolog protein 1 protein.
Length = 541
Score = 34.3 bits (75), Expect = 0.074
Identities = 23/81 (28%), Positives = 35/81 (43%)
Frame = +2
Query: 269 RYSRQILLSDIGVEGQVKICSAKVLIXGAGGLGCPAAMYLAGAGIGEIGIVDYDAVDLTN 448
RY RQ+ L G EGQ I S + G+ L L AG+ +VD V+ +
Sbjct: 9 RYDRQVRLW--GEEGQASIGSTSACVLGSDSLATEILKSLVLAGVQSFYVVDDAKVEQAD 66
Query: 449 VHRQLLHHESNENTSKAFSAL 511
+ + H + S+A + L
Sbjct: 67 IGQNFFLHADDIGRSRAEATL 87
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 414 PISPMPAPARYMAAGHPRPPAPXISTLAEQILTCPSTP 301
P +P+P P + P PP P +S L ++L P+TP
Sbjct: 154 PPTPIPTPVPILEPPPPPPPVPPLSPL-YKVLEIPATP 190
>Z96047-3|CAB09412.1| 207|Caenorhabditis elegans Hypothetical
protein DY3.3 protein.
Length = 207
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -1
Query: 294 ERRI*RLYLSIAHLEDRHLLMILK-HHLSADCDYLILYLIVDH*SNFLIP 148
ER ++ L +A+ + ++ L+ LK +H+ C + +I+ H SN+ +P
Sbjct: 155 ERSFRKIVLQVANRDMKNSLLYLKLYHILKICTFCSCIIILQHLSNYCLP 204
>Z81485-2|CAB03974.2| 708|Caenorhabditis elegans Hypothetical
protein C49F5.2 protein.
Length = 708
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 14 ECVFSCRCCSQKNIIKLIRNGQSQCFRDGNIRTSQN 121
E V C+CCSQ ++ N CF S+N
Sbjct: 363 ENVIRCKCCSQDPVVNCFDNKDCPCFIANQFLQSRN 398
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 408 SPMPAPARYMAAGHPRPPAPXISTLAEQILTCPSTPMSERRI 283
SP P PA + P PP P I+T + P P E+ I
Sbjct: 477 SPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPALEQEI 518
>AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical
protein Y47D3B.6 protein.
Length = 269
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 414 PISPMPAPARYMAAGHPRPPAPXISTLAEQILTC 313
P+ PAPA AA PPAP I+ A+ L C
Sbjct: 80 PVFAAPAPAPVFAAPFAAPPAPVIA--AQPALGC 111
>U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical
protein T01C8.5 protein.
Length = 408
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -2
Query: 461 VVCARWSDPPRHNPRCLFR--QCPPRQGTWQPDI 366
V+ A WS+PP H R + + P R+ W I
Sbjct: 283 VIRANWSNPPAHGARIVHKVLTTPARREQWNQSI 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,623,873
Number of Sequences: 27780
Number of extensions: 282244
Number of successful extensions: 865
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -