Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0948
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.9  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -1

Query: 417 MPISPMPAPARYMAAGHPRPPAPXISTLAEQILTCPSTPMSERRI*R---LYLSIAHLED 247
           +P+S +P P++  A GH +      S    Q  T PS   S RR  R    Y S++ ++ 
Sbjct: 368 IPLSAIPEPSKNPAMGHWQMSCVACSPPPRQ--TPPSRKESGRRRRRRTPRYNSVSKIDR 425

Query: 246 RHLLMILKHHLSADCDYLILYL 181
              ++     L+ +  Y   YL
Sbjct: 426 ASRIVFPLFFLAINVFYWFAYL 447


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 496 GVLGPESLRCINSKIKITPYNVQLDSKNAQQIR 594
           G++G  SL C N    +   N+++ +KN + ++
Sbjct: 318 GLVGDTSLACWNENRLLDRRNIEVVAKNKETLQ 350


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 469 VQQLSVHVGQIHRVIIHDAYFANARPGKVHGSRTS 365
           V+ LSV    I  + + D +F N +    H + TS
Sbjct: 80  VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTS 114


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 469 VQQLSVHVGQIHRVIIHDAYFANARPGKVHGSRTS 365
           V+ LSV    I  + + D +F N +    H + TS
Sbjct: 80  VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTS 114


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 469 VQQLSVHVGQIHRVIIHDAYFANARPGKVHGSRTS 365
           V+ LSV    I  + + D +F N +    H + TS
Sbjct: 19  VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTS 53


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +1

Query: 496 GVLGPESLRCINSKIKITPYNVQLDSKNAQQIRF 597
           G++   +L C N    +   N+++ +KN   ++F
Sbjct: 317 GLVSDTALGCWNENRPLKRRNIEIVAKNNDTLQF 350


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 378 AAGHPRPPAPXISTLA 331
           +AG P PP P +S ++
Sbjct: 412 SAGAPMPPIPNMSNMS 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,839
Number of Sequences: 438
Number of extensions: 3635
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)