Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0947
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    31   0.12 
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    30   0.27 
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    26   3.3  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   5.8  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 294 SWIA*WTNASAPYALFSVMYNVAVPNS*SFMRSFVDGDCSNTPSAGSA 151
           +W   WT    P   F   YN+A+PN+ ++ RS V    +   +A  A
Sbjct: 318 TWDNLWTQDPPPMQSFRPNYNIAIPNAPAYYRSNVTAAAAANAAAAFA 365


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 280 SGNPAPTINLLYPSISLHAIQREPSPALYMG-LNYELRLPELSQQAG 417
           SG P+   N L  + S+ + ++EPS  L++G L++E    +L +  G
Sbjct: 203 SGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFG 249


>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 106 LNILKYNNGSCVK*FC*AGRWCVATVS 186
           ++I++YN GSCV     AG+ CVA  S
Sbjct: 1   MSIMEYNGGSCV---AMAGKNCVAIAS 24


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 74  FLINDFQSLGLLVMRKNKNKAFQ 6
           FLI  F S G+L  R++  KAF+
Sbjct: 642 FLIGQFHSQGVLGFRRDLGKAFE 664


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,279
Number of Sequences: 5004
Number of extensions: 44073
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)