Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0947
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0264 - 21785450-21786928                                         29   2.6  
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    28   5.9  
06_02_0211 - 13043968-13044646,13044752-13045037,13045903-130459...    28   5.9  

>11_06_0264 - 21785450-21786928
          Length = 492

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 262 GGGVSPSGNPAPTINLLYPSISLHAIQREPSPALYMGL 375
           GGG + S +P+P    +  S S H     P P  Y+ +
Sbjct: 299 GGGAASSSSPSPVARTVLSSPSPHQYSSGPKPTQYLAV 336


>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 7    WKALFLFFLITNKPRDWKSFIKN*LNAFLVFILLN 111
            W +LF    +   P +W S+IK  L++    +LLN
Sbjct: 1067 WSSLFKILAVRGFPENWISWIKGLLSSSKSAVLLN 1101


>06_02_0211 -
           13043968-13044646,13044752-13045037,13045903-13045979,
           13046039-13046139,13046348-13046412,13048296-13048581
          Length = 497

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 271 VSPSGNPAPTINLLYPSISLHAIQREPSPALYMGL--NYELRLPELSQQAG 417
           V PS       +  YP  +  A +  P+PA   GL  NYE +  E++ + G
Sbjct: 65  VKPSPREGDGASSSYPDAAAAAARSSPTPAADSGLSNNYEYKFDEVNLKQG 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,971,887
Number of Sequences: 37544
Number of extensions: 294363
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)