Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0942
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 159 3e-40
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 159 4e-40
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 159 4e-40
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 97 3e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 91 2e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 73 4e-14
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 0.003
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.019
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.033
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 32 0.10
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 32 0.10
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.23
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.31
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.54
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.72
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 28 1.3
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 28 1.7
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.8
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 6.7
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 26 6.7
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 8.8
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 8.8
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 25 8.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 159 bits (387), Expect = 3e-40
Identities = 74/84 (88%), Positives = 79/84 (94%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 436
IALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTR
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTR 134
Query: 437 EHALLAFTLGVKQLIVGVNKMDST 508
EHALLA+TLGVKQLIV VNKMD+T
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTT 158
Score = 141 bits (342), Expect = 8e-35
Identities = 66/73 (90%), Positives = 68/73 (93%)
Frame = +3
Query: 36 MGKEKTHINIVVIGXVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HIN+VVIG VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 216 DKLKAEREXRITI 254
DKLKAERE ITI
Sbjct: 61 DKLKAERERGITI 73
Score = 116 bits (278), Expect = 5e-27
Identities = 48/80 (60%), Positives = 63/80 (78%)
Frame = +1
Query: 517 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEG 696
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 697 KADGKCLIEALDAILPXARP 756
GK L+EA+D+I P ARP
Sbjct: 220 VVKGKTLLEAIDSIEPPARP 239
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 159 bits (386), Expect = 4e-40
Identities = 73/84 (86%), Positives = 79/84 (94%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 436
IALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTR
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTR 134
Query: 437 EHALLAFTLGVKQLIVGVNKMDST 508
EHALLA+TLGVKQLIV VNKMD+T
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTT 158
Score = 141 bits (342), Expect = 8e-35
Identities = 66/73 (90%), Positives = 68/73 (93%)
Frame = +3
Query: 36 MGKEKTHINIVVIGXVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HIN+VVIG VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 216 DKLKAEREXRITI 254
DKLKAERE ITI
Sbjct: 61 DKLKAERERGITI 73
Score = 116 bits (278), Expect = 5e-27
Identities = 48/80 (60%), Positives = 63/80 (78%)
Frame = +1
Query: 517 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEG 696
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 697 KADGKCLIEALDAILPXARP 756
GK L+EA+D+I P ARP
Sbjct: 220 VVKGKTLLEAIDSIEPPARP 239
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 159 bits (386), Expect = 4e-40
Identities = 73/84 (86%), Positives = 79/84 (94%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 436
IALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTR
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTR 134
Query: 437 EHALLAFTLGVKQLIVGVNKMDST 508
EHALLA+TLGVKQLIV VNKMD+T
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTT 158
Score = 141 bits (342), Expect = 8e-35
Identities = 66/73 (90%), Positives = 68/73 (93%)
Frame = +3
Query: 36 MGKEKTHINIVVIGXVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HIN+VVIG VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 216 DKLKAEREXRITI 254
DKLKAERE ITI
Sbjct: 61 DKLKAERERGITI 73
Score = 116 bits (278), Expect = 5e-27
Identities = 48/80 (60%), Positives = 63/80 (78%)
Frame = +1
Query: 517 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEG 696
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 697 KADGKCLIEALDAILPXARP 756
GK L+EA+D+I P ARP
Sbjct: 220 VVKGKTLLEAIDSIEPPARP 239
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 96.7 bits (230), Expect = 3e-21
Identities = 42/77 (54%), Positives = 56/77 (72%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 451
FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+L
Sbjct: 311 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 370
Query: 452 AFTLGVKQLIVGVNKMD 502
A T G+ L+V +NKMD
Sbjct: 371 ARTQGINHLVVVINKMD 387
Score = 77.8 bits (183), Expect = 2e-15
Identities = 35/69 (50%), Positives = 48/69 (69%)
Frame = +3
Query: 48 KTHINIVVIGXVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 227
K H+NIV IG VD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 228 AEREXRITI 254
ERE T+
Sbjct: 296 EEREKGKTV 304
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 90.6 bits (215), Expect = 2e-19
Identities = 43/82 (52%), Positives = 53/82 (64%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 436
+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQTR
Sbjct: 245 VASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTR 304
Query: 437 EHALLAFTLGVKQLIVGVNKMD 502
EHA L LG+ +++V VNK+D
Sbjct: 305 EHAYLLRALGISEIVVSVNKLD 326
Score = 71.3 bits (167), Expect = 1e-13
Identities = 32/73 (43%), Positives = 48/73 (65%)
Frame = +3
Query: 48 KTHINIVVIGXVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 227
K +++VV G VDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 228 AEREXRITIILLS 266
ER +T+ + S
Sbjct: 235 EERARGVTMDVAS 247
Score = 45.6 bits (103), Expect = 8e-06
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = +1
Query: 517 YSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKGWQVER 687
+SE RF+EIK VS + IK +G+ + V FVPIS G N++ + S W+K
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK------ 383
Query: 688 KEGKADGKCLIEALDAILPXARP 756
G L+ ALD ++P +P
Sbjct: 384 ------GPTLLSALDQLVPPEKP 400
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 72.9 bits (171), Expect = 4e-14
Identities = 35/78 (44%), Positives = 52/78 (66%)
Frame = +2
Query: 269 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 448
++ET+ + +D PGH D+IKNMITG + D A+++V+A G+ QTREH L
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162
Query: 449 LAFTLGVKQLIVGVNKMD 502
LA +GVKQ++V +NK+D
Sbjct: 163 LARQVGVKQIVVYINKVD 180
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 42 KEKTHINIVVIGXVDSGKSTTTGHLIYKC 128
++K H+NI IG VD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +2
Query: 290 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 469
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 470 KQLIVGVNKMD 502
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.019
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 442
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +3
Query: 60 NIVVIGXVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
NI + +DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 240 XRITI 254
ITI
Sbjct: 111 KGITI 115
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.033
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 397
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 31.9 bits (69), Expect = 0.10
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 36 MGKEKTHINIVVIGXVDSGKSTTTGHLIYKCG 131
MGK N+ VI VD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 287 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 382
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 31.9 bits (69), Expect = 0.10
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 36 MGKEKTHINIVVIGXVDSGKSTTTGHLIYKCG 131
MGK N+ VI VD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 287 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 382
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 263 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 397
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.31
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 287 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 397
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.54
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 299 IIDAPGHRDFIKNMITGTSQADCAVLIV 382
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.1 bits (62), Expect = 0.72
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +2
Query: 293 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 472
+ +ID PGH DF + + D AV I+ + AG+ QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147
Query: 473 QLIVGVNKMD 502
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = -3
Query: 376 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNMIVIRXSRSAFSLSNTQAYL 197
EH+A+ L S +L IS R N GNI L S + ++ S + L+ + A
Sbjct: 5 EHAALPLASS-PSILGPISGGR--NRGNIQLQSIPIEFQAVVFAGFGNSLYPLTGSDALP 61
Query: 196 KDPLPI 179
K LPI
Sbjct: 62 KALLPI 67
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 506 TNHHTVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDG 676
TN T +PD+ ++PHT +R +T + L LSC + +E + P G +D
Sbjct: 142 TNSST-NPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDN 200
Query: 677 RWSVRKA 697
+ + ++
Sbjct: 201 GYVISQS 207
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 302 IDAPGHRDFIKNMITGTSQADCAVLIV 382
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 6.7
Identities = 26/79 (32%), Positives = 35/79 (44%)
Frame = +2
Query: 380 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTNHHTVSPDLRKSRRKYP 559
VA GT E GI NG E+A+ A +I V++ +H + KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 560 HTSRRLATTQLLSLSCPFL 616
L T S + P L
Sbjct: 96 AEVFELTNTLAASPAPPSL 114
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 340 HVLDEISVSRSINDGNIVLASFELPESNMIVIRXSRSAFS 221
+ +D+ SV R +N + + ELPE + + R AFS
Sbjct: 607 YTIDDDSVERIMNCIRAIYSFEELPEFQTVFLDDMRKAFS 646
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 310 SINDGNIVLASFELPESNMIVIRXSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 131
S++ + L S+ P S + A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 222 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 94
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = -2
Query: 755 GRAXGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 618
G G S+ P+ LPS + P L E +ML CH
Sbjct: 545 GAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,849
Number of Sequences: 5004
Number of extensions: 66209
Number of successful extensions: 237
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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