Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0941
         (902 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P38734 Cluster: Low-affinity methionine permease; n=4; ...    39   0.15 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   5.7  
UniRef50_UPI0000E488A9 Cluster: PREDICTED: similar to plexin b, ...    33   10.0 

>UniRef50_P38734 Cluster: Low-affinity methionine permease; n=4;
           Saccharomycetales|Rep: Low-affinity methionine permease
           - Saccharomyces cerevisiae (Baker's yeast)
          Length = 546

 Score = 39.1 bits (87), Expect = 0.15
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = -3

Query: 891 RVITCVXGLPRGPSSDQISITKAFNPKLHGAFISIPSPLSKRKLILRAVFAVLVPRRNSY 712
           +V+T    +  GP    +  TK F P++ G FI+    +S    IL  ++++    +  +
Sbjct: 316 KVLTYEEIVSAGPLVGSVLFTKLFGPRVGGKFIAFSIAISAASNILVVIYSISRVNQEIF 375

Query: 711 SKVT*IFEVHTYKNWNF 661
            +    F +H  KNW F
Sbjct: 376 KEGYLPFSIHMSKNWPF 392


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = -3

Query: 606 CPLSFSPDHLSVLRFRSGGRFCDLAL 529
           CPLSFSPD LS  RFR+G  +  L L
Sbjct: 395 CPLSFSPDLLSGSRFRTGAEYEMLGL 420


>UniRef50_UPI0000E488A9 Cluster: PREDICTED: similar to plexin b,
            partial; n=5; Strongylocentrotus purpuratus|Rep:
            PREDICTED: similar to plexin b, partial -
            Strongylocentrotus purpuratus
          Length = 3637

 Score = 33.1 bits (72), Expect = 10.0
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -1

Query: 353  VGPGRKNKCFCYDV*PTKYERFIPLCFSQGYNAYLVLAVGLLTDSWKRSVVFCLL 189
            VG G K + +C  +  T    FIP+  S GY+   +LA  L T+  K   V C+L
Sbjct: 2980 VGSGNKGQSYCPQLLATSERLFIPVNISSGYS---LLANNLPTEQTKVQSVDCIL 3031


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 862,466,982
Number of Sequences: 1657284
Number of extensions: 17125674
Number of successful extensions: 34529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34526
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81981722200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)