Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0941
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   5.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   8.8  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = -1

Query: 251 LVLAVGLLTDSWKRSVVFCLLNKRDQYYFVQIHIVLRSVRKLSFL 117
           L++ +G L      + V  L N+  +Y F  +H++ + V  + ++
Sbjct: 20  LIIVMGALMTYGPEANVNLLKNRTGRYMFTYLHLLYQDVHVMIWI 64


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 545 NLPPDRKRNTLR*SGEKLSGQNLMN 619
           N P D  RNTL  +G+ +   N+ N
Sbjct: 30  NFPNDNIRNTLISNGDYIEENNMPN 54


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 870 GLPRGPSSDQISITKAFNPKLHGAFISIPSPLSKR-KLILRAVFA 739
           GL +GP +   +    F PKL G    IP P     K+I  +V A
Sbjct: 564 GLGKGPRTTYCAFWNEFLPKLKG----IPDPXPNTCKVIASSVSA 604


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,999
Number of Sequences: 438
Number of extensions: 5610
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)