Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0940
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   106   3e-24
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   105   8e-24
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    94   3e-20
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    27   3.4  

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  106 bits (255), Expect = 3e-24
 Identities = 46/91 (50%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
 Frame = +2

Query: 512 WGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKF 691
           +G PN K+VREL+YKRGF K++ QRIP++ N+I+E  L K++I+ VEDLIHEI+TVG  F
Sbjct: 143 YGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNF 202

Query: 692 KYASNFLWALQIEQS-NWWLAQEDHHYVDGG 781
           K A+NFLW  ++      W  ++  H+++GG
Sbjct: 203 KQAANFLWPFKLSSPLGGWRERKFKHFIEGG 233



 Score = 69.7 bits (163), Expect = 5e-13
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = +1

Query: 259 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 426
           Y  EYR  ER++I LAR+AR  GNY+VP E KL FV+RIRGIN + PK+ K    L
Sbjct: 58  YEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113



 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
 Frame = +3

Query: 399 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYMLGDTPT*R-VSVS*YTNVDSPS* 575
           + RK++QL RL QINNG+FV+ NKA   ML++ EPY+    P  + V    Y        
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVN 164

Query: 576 VDNVYQSLPTALLRRGSINTTLSVLRXXXXXXXXXXXXXXXXVISCGPFKLNNPTGGWR- 752
              +  S   A++       ++  +                      PFKL++P GGWR 
Sbjct: 165 KQRIPLS-DNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRE 223

Query: 753 KKTIIMSTGGDFGNRED 803
           +K      GGD G R++
Sbjct: 224 RKFKHFIEGGDAGKRDE 240


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  105 bits (252), Expect = 8e-24
 Identities = 45/91 (49%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
 Frame = +2

Query: 512 WGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKF 691
           +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E  L K++I+ +EDLIHEI+TVG  F
Sbjct: 144 YGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNF 203

Query: 692 KYASNFLWALQIEQS-NWWLAQEDHHYVDGG 781
           K A+NF+W  Q+      W  ++  H+++GG
Sbjct: 204 KQAANFIWPFQLSSPLGGWRDRKFKHFIEGG 234



 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 33/56 (58%), Positives = 38/56 (67%)
 Frame = +1

Query: 259 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 426
           Y  EYR  ER++I L R+AR  GNYYVP E KL FVIRIRGIN + PK+ K    L
Sbjct: 59  YDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114



 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
 Frame = +3

Query: 399 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYMLGDTPT*R-VSVS*YTNVDSPS* 575
           + RK++QL RL QINNGVFV+ NKAT  ML++ EPY+    P  + V    Y        
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVN 165

Query: 576 VDNVYQSLPTALLRRGSINTTLSVLRXXXXXXXXXXXXXXXXVISCGPFKLNNPTGGWR- 752
              +  S   A++       ++  +                      PF+L++P GGWR 
Sbjct: 166 KQRIALS-DNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRD 224

Query: 753 KKTIIMSTGGDFGNREDQDSTI 818
           +K      GGD G R++  +++
Sbjct: 225 RKFKHFIEGGDAGKRDEHINSL 246


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 40/91 (43%), Positives = 62/91 (68%)
 Frame = +2

Query: 512 WGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKF 691
           +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI+ VG  F
Sbjct: 142 YGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHF 201

Query: 692 KYASNFLWALQIEQSNWWLAQEDHHYVDGGR 784
           K  + FLW   +      L ++   + + GR
Sbjct: 202 KEVTKFLWPFTLTPVKHSLMEKKVKHFNEGR 232



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 26/56 (46%), Positives = 36/56 (64%)
 Frame = +1

Query: 259 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 426
           ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK  K    L
Sbjct: 57  FINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 25/42 (59%), Positives = 31/42 (73%)
 Frame = +3

Query: 399 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYMLGDTP 524
           ++RKVL+L RL +INN VFVR NKA   MLRI EPY++   P
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIP 145


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -2

Query: 697 VLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 518
           +L +F+  +D M   L T+N +    +L +A    W TL    G + F Y     L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376

Query: 517 S 515
           S
Sbjct: 377 S 377


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
 Frame = +2

Query: 482 YATYRRAL-HAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVE---KRLHKHNIICV 649
           Y   +R L H W YP L S+  +    G    SG +  I +  I +   + +       V
Sbjct: 297 YPDPKRTLQHRWRYPTL-SLHGI---EGAFSGSGAKTVIPAKVIGKFSIRTVPNMESETV 352

Query: 650 EDLIHEIFTVGEKFKYASNFLWALQIEQSNWWLAQEDHHYVDGGR 784
           E L+ E  T       + N L    +   +WW++  DH + D G+
Sbjct: 353 ERLVKEHVTKVFNSLNSKNKLAFNNMHSGSWWISSPDHWHYDVGK 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,406,630
Number of Sequences: 5004
Number of extensions: 72126
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)