Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0940
(857 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 118 5e-27
U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical pr... 31 0.79
AF098986-5|AAC67426.1| 671|Caenorhabditis elegans Hypothetical ... 31 1.4
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 29 4.2
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 29 4.2
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 29 4.2
AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical ... 29 5.6
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 118 bits (284), Expect = 5e-27
Identities = 53/108 (49%), Positives = 74/108 (68%)
Frame = +2
Query: 509 AWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEK 688
AWGYPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+EDL HEI TVG
Sbjct: 137 AWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPH 196
Query: 689 FKYASNFLWALQIEQSNWWLAQEDHHYVDGGRLW*PRRPRFNDFLXRM 832
FK A+NFLW ++ ++ +H+V+GG R + N+ L +M
Sbjct: 197 FKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFG-NREDQINNLLRKM 243
Score = 88.6 bits (210), Expect = 5e-18
Identities = 53/134 (39%), Positives = 63/134 (47%)
Frame = +3
Query: 405 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYMLGDTPT*RVSVS*YTNVDSPS*VDN 584
RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+ P + N
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGN 161
Query: 585 VYQSLPTALLRRGSINTTLSVLRXXXXXXXXXXXXXXXXVISCGPFKLNNPTGGWRKKTI 764
++ + + L PFKLNNPTGGW KKT
Sbjct: 162 RVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTN 221
Query: 765 IMSTGGDFGNREDQ 806
GGDFGNREDQ
Sbjct: 222 HFVEGGDFGNREDQ 235
Score = 65.3 bits (152), Expect = 5e-11
Identities = 28/51 (54%), Positives = 40/51 (78%)
Frame = +1
Query: 259 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 411
YV+EYR +++ +RL R+A +G++YVP E K+AFV+RIRGINQ+ PK K
Sbjct: 53 YVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 113 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAD 256
+KK+P VPE+VLK Q + + +KK + FKRA+
Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAE 51
>U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical
protein W06A11.4 protein.
Length = 347
Score = 31.5 bits (68), Expect = 0.79
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +2
Query: 224 KKKREIFKRADSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 403
KK+R++ ++ SR ASR +K K A +T P +PN + S S S ++ +
Sbjct: 21 KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80
Query: 404 P*SSATV*TAP 436
S + + P
Sbjct: 81 RSSQVKIRSVP 91
>AF098986-5|AAC67426.1| 671|Caenorhabditis elegans Hypothetical
protein C36C9.4 protein.
Length = 671
Score = 30.7 bits (66), Expect = 1.4
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = -3
Query: 717 AHRKLLAYLNFSPTVKISWMRSST---QIMLCLWSL-FSTMLLEVIGIRCPLSLANPRLY 550
A RK++ + NF+ T +I++CL +L F T+ E + L + +Y
Sbjct: 390 AFRKVVLHSNFTNVEACRNGTDKTNFFRIVICLVALSFDTLSPEARVVIVGLGMLGNEMY 449
Query: 549 TNSRTLFKLGYPQACKARRYVAYSQ*PYSDVQTHHCLFGAV*TVAELYG 403
TNS+ A A +++ + Y ++ H LF + + EL+G
Sbjct: 450 TNSKASCLFEQQMAAGAAWFLSEANVEYLSIKAHEVLF-HLPEINELFG 497
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 333 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 467
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 333 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 467
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 333 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 467
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377
>AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical
protein F36F12.1 protein.
Length = 518
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 324 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 446
+Q++R G Q+GI PW P F++V R L+ R ++ N
Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,896,649
Number of Sequences: 27780
Number of extensions: 402093
Number of successful extensions: 990
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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