Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0939
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 45 1e-05
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 44 3e-05
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 38 0.002
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 35 0.016
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 30 0.34
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 28 1.4
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 2.4
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 27 3.2
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 27 3.2
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 27 3.2
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.2
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 4.2
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 4.2
SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit ... 27 4.2
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 5.5
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos... 26 7.3
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 26 7.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.7
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Frame = +3
Query: 267 EYEVERILEVHHKKNGK-REFLIHWKGWSSKFDSWEPESNLN-CSELIKKF 413
EYEVERI++ +NG + + I W +SS+ D+WEP NL+ CS ++ ++
Sbjct: 7 EYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEW 57
Score = 33.1 bits (72), Expect = 0.048
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 37 YLIRWKGYSADSYTWEPEQTLS-CPELIGKF 126
Y IRW YS+ S TWEP + LS C ++ ++
Sbjct: 27 YRIRWLNYSSRSDTWEPPENLSGCSAVLAEW 57
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +3
Query: 270 YEVERILEVHHKKNGKREFLIHWKGWSSKFDSWEPESNLNCSELIKK 410
YEVE IL KNG E+ I W G+ ++WEPE NL +E + K
Sbjct: 22 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLK 68
Score = 32.7 bits (71), Expect = 0.064
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 1 ILDSKKIKGKLHYLIRWKGYSADSYTWEPEQTLSCPELIGK 123
+ D G Y I+W GY TWEPEQ L E + K
Sbjct: 28 LADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLK 68
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +3
Query: 255 DENAEYEVERILEVHH-KKNGKREFLIHWKGWSSKFD-SWEPESNLN-CSELIKKFMDKV 425
+E EY VE++L+ +K G E+L+ W+G+ D +W E++ + C +LI+ + ++
Sbjct: 76 EEEDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAYWNE- 134
Query: 426 SSARSLDSRNLRVA 467
R S+ R A
Sbjct: 135 HGGRPEPSKRKRTA 148
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 25 GKLHYLIRWKGYSADS-YTWEPEQTLS-CPELI 117
G YL++W+GY S TW E S C +LI
Sbjct: 96 GGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLI 128
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 34.7 bits (76), Expect = 0.016
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 282 RILEVHHKKNGKR--EFLIHWKGWSSKFDSWEPESNLNCSELIKKFMDKVSSARSLDSRN 455
R++E H EFLI W +S +WEP +N++ KK + + LD R
Sbjct: 200 RLIEGHDGSTPSEDYEFLIKWVNFSHLHCTWEPYNNISMIRGSKKVDNHIKQVILLD-RE 258
Query: 456 LRVAPETT 479
+R P TT
Sbjct: 259 IREDPTTT 266
Score = 33.9 bits (74), Expect = 0.028
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +3
Query: 267 EY-EVERILEVHHKKNGKREFLIHWKGWSSKFDSWEPESNLN--CSELIKKFMDKVSSAR 437
EY +V+RI+ H +G E+L+ WK F +WE S + + I+ F ++ SA
Sbjct: 286 EYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTWEASSIIEPIAATEIQAFQEREESAL 345
Query: 438 S 440
S
Sbjct: 346 S 346
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 25 GKLHYLIRWKGYSADSYTWE 84
G + YL++WK D TWE
Sbjct: 302 GSVEYLVKWKQLLYDFCTWE 321
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 30.3 bits (65), Expect = 0.34
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 324 FLIHWKGWSSKFDSW-EPESNLNCSELIKKFMDKVSSARSLDSRNLRVAPETTNRFTLQD 500
+LIH+KGW + +D W E + L +E K ++ +A ++ +R + ++ + + D
Sbjct: 36 YLIHYKGWKNSWDEWVEQDRILQWTEENLKTQKELKNA-AISTRQKPTSKKSASSTSKHD 94
Query: 501 PSSGV 515
S+GV
Sbjct: 95 -STGV 98
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 393 SELIKKF--MDKVSSARSLDSRNLRVAPETTNRFTLQDPSSGVV 518
S+LI + +DK ARS+ R +AP+T++ L P++G V
Sbjct: 389 SQLIDAYWNLDKYIRARSVYDRMGLIAPQTSHTLLLSQPTNGDV 432
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 321 EFLIHWKGWSSKFDSWEPESNLNCSELIKKFMDKVSSARSLDSRNLRVAPETT 479
++LI W+ S ++WE S L+ KK +D + R +R P TT
Sbjct: 231 QYLIKWQEVSHLHNTWEDYSTLSSVRGYKK-VDNYIKQNIIYDREIREDPTTT 282
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 22 KGKLHYLIRWKGYSADSYTWEPEQTLS 102
K YLI+W+ S TWE TLS
Sbjct: 227 KSSYQYLIKWQEVSHLHNTWEDYSTLS 253
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 22 KGKLHYLIRWKGYSADSYTWE 84
+GK Y ++W+ D+ TWE
Sbjct: 317 EGKTEYFVKWRQLPYDNCTWE 337
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 267 EYE-VERILEVHHKKNGKREFLIHWKGWSSKFDSWE 371
EY+ VERI+ + GK E+ + W+ +WE
Sbjct: 302 EYKIVERIVASETNEEGKTEYFVKWRQLPYDNCTWE 337
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 27.1 bits (57), Expect = 3.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 687 HSSHFHAYLNENQNISFKVKYLNVNDKL 770
H +H H EN+N++ +Y ++N L
Sbjct: 161 HKTHLHIPYRENKNLTGTARYASINTHL 188
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 414 MDKVSSARSLDSRNLRVAPETTNR-FTLQDPSSGVVLVRDVDSVKGCVMIMPSNESQVVK 590
+D + S DS+ +++ + T + F+ +P+ V + DV ++G +I+ +NE +
Sbjct: 293 LDGTARVLSADSKIIKIWEKDTGKPFSSIEPT---VELNDVCPIEGTGLILTANEGSPMH 349
Query: 591 LIVIPNL 611
IP+L
Sbjct: 350 AFYIPSL 356
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 27.1 bits (57), Expect = 3.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 474 SPEQLSNFGNPMNGRCSLY 418
SPEQ+ N G P++ R +Y
Sbjct: 201 SPEQIGNVGRPLDSRSDIY 219
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 418 SMNFFMSSEQFRLLSGSHESNLLDQPFQWIKNSLFPFFL*C 296
S F +++E ++ GS++S QPFQW + FL C
Sbjct: 1765 SAPFKLTTEMIAVMGGSNKS----QPFQWFQELCVKAFLAC 1801
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +2
Query: 44 FAGKDILQTVILGNLSKLCLVLN*SENLMKKRRI-----LKIRNENLVL 175
+ G+ L+ ++ N+S +CLV S+ K+R I L+I +EN+++
Sbjct: 655 YFGRRFLEYLVKLNISVVCLVRESSDEAAKERLISLVPSLRISSENIIV 703
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 384 LNCSELIKKFMDKVSSARSLDSRNLRVAPETTNRFTLQDPSSGVV 518
+N +EL +K + +S +LD+ +L+VAP T + SSG +
Sbjct: 305 VNVAELNRKPLYPLSDGETLDTSHLQVAPGTLIVLDETELSSGTL 349
>SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit
Arc34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 438 SLDSRNLRVAPETTNRFTLQDPSSGVVLVRDVDSV 542
SLD N+ + T RF+ ++PSS +V D D V
Sbjct: 3 SLDYNNIFIYELLTERFSSENPSSIDQVVTDFDGV 37
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 811 LLIWLMSKLYSENNNLSFTFRYFTLKEIFW 722
+L+ + +K Y +N FRY LK +FW
Sbjct: 378 ILVDIEAKFYDPSNE-DIQFRYIFLKMVFW 406
>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 513 VVLVRDVDSVKGCVMIMPSNESQVVKLIVIPNLQEFCGIVCAS 641
VVLV + + GC ++ S++SQV+ L+ +F G++ S
Sbjct: 179 VVLVEFLATRLGCYLLNISSQSQVLDLLAFSG-YKFVGLILTS 220
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = +3
Query: 258 ENAEYEVERILEVHHKKNGKREFLIHWKGWSSKFDSWEPESNLNCSELIK 407
++ EY IL + + G + +H+ ++ + D W N++ S+ I+
Sbjct: 31 KDGEYRKAEILMIQKRTRGV-VYYVHYNDYNKRLDEWITIDNIDLSKGIE 79
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 9.7
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = +3
Query: 351 SKFDSWEPESNLNCSELIKKFMDKVSSARSLDSRNLRVAPETTNRFTLQDPSSGVVLVRD 530
SK SWE +S + K+ M + + LDS+ L R D S +
Sbjct: 1623 SKTTSWELDSTEGSERMRKRLMPCLLQSSELDSK-LEARSSGARRNRSFDTSVEAPVSLT 1681
Query: 531 VDSVKGCVMIMPSNE 575
+ + +I+PS E
Sbjct: 1682 NEEKQAATLILPSQE 1696
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,466
Number of Sequences: 5004
Number of extensions: 57151
Number of successful extensions: 170
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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