Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0938
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    28   1.5  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    27   2.0  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   4.6  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   6.1  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.1  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    26   6.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   8.0  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   8.0  

>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 348 LEFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGD 452
           LE+ L+L  +   K+IN HD ++ TL   L    D
Sbjct: 457 LEWVLLLQRRTGGKLINMHDPIFQTLLLQLSDPSD 491


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 548 KYNQRLKMGDPVKDDERKVFSSDDATDSTSQWYL---QAMNXQGDLYFSYS 691
           K +  L  G P++ D    FSS+D  D+T+ +YL   +    +G++Y ++S
Sbjct: 146 KKSHHLFSGSPLRLDLNS-FSSEDNADATNSFYLDEPEFCTIKGNIYSNWS 195


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 351 EFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 491
           E   + D++ D + +   D+  +  S D+ ++GD     DEDD K+S
Sbjct: 345 EAEWVADEEDDGEDLESEDE-EVDNSDDIVEDGDNAFVDDEDDDKDS 390


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 375 KKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKF-MSSGNRTEFISKSLTRN 551
           K+D    + H +    LSK+L+   +RD    + +  NS +    + N TE +S +  ++
Sbjct: 115 KQDEHKTDVHKESVSKLSKNLESRNNRDENSAKREKNNSHQVEADTNNATEMVSSNAKKS 174


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 566 KMGDPVKDDERKVFSSDDATDSTSQWYLQAMNXQG 670
           ++GD VK+ + +   + +  DSTS+W L   N  G
Sbjct: 562 EIGDYVKELDEESKKAIENKDSTSEWLLHLYNFFG 596


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +2

Query: 587 DDERKVFSSDDATDSTSQW 643
           +DE  V+SSD +T+S+SQ+
Sbjct: 328 EDEESVYSSDVSTESSSQF 346


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 155 TIQ*LPLTTMMQPKDASNFNPNRMVR 232
           T++  PL+ M + KD+S F  NR+++
Sbjct: 209 TVEPTPLSFMSEMKDSSQFYANRVMK 234


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +3

Query: 231 VHHKEHSYELLNNAESNTINFSY--KLWTTGHQNIVQSCFPLEFRLILDDKKDCKIINKH 404
           V + +  Y LLN + +NT +F Y   LW +     + + FPL     LDD  D K     
Sbjct: 111 VQYIKELYTLLNESSNNTWHFHYIVLLWLS---QALNTPFPLN---SLDDSLDVK----- 159

Query: 405 DDLYMTLSKDLDQNG-DRDA 461
             +Y    K L+ +G D++A
Sbjct: 160 KTIYTIAIKYLENSGIDKEA 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,777
Number of Sequences: 5004
Number of extensions: 54602
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)