Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0937
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           24   1.6  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           24   1.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.0  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 459 RQFPSFS*APXN*LPRGKRFCLH 391
           R F +F   P N LP  KRF  H
Sbjct: 63  RYFTAFMDTPLNELPANKRFQAH 85


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 459 RQFPSFS*APXN*LPRGKRFCLH 391
           R F +F   P N LP  KRF  H
Sbjct: 63  RYFTAFMDTPLNELPANKRFQAH 85


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -2

Query: 394 SPXYATXILGLPPSXTTXKGQCXMSACTVAIFELTSDETFGIEYCVXGFIVHLVLG 227
           S  +A     LPP          MS CTV +F         +EYC    +V++VLG
Sbjct: 288 STQHAKSQASLPPVSYLKAVDAFMSVCTVFVFMAL------MEYC----LVNIVLG 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,840
Number of Sequences: 438
Number of extensions: 2664
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)