Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0936
         (786 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    25   2.0  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    24   4.6  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   6.1  

>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 705 ILLIK*ALECNEFFNSNVVFHIISN 631
           I+ ++ +  C  F NSN ++H+++N
Sbjct: 621 IVFLEPSWHCGPFSNSNRIYHLLTN 645


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 174 WKFSFIIQCLSMNRFH*RLLDY*YNI*VKSHYCNVLFDDV 293
           +KF+ ++Q   +N  H R+LD  Y     +  C+ +F  V
Sbjct: 267 FKFNGLVQLNHINNSHGRMLDLLYANNAAAKLCSPVFPSV 306


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 637 YYVKDNIGIKKF 672
           YYVK N+G+++F
Sbjct: 88  YYVKPNVGVRQF 99


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,072
Number of Sequences: 2352
Number of extensions: 13120
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)