Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0936
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical pr...    31   0.93 
U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside tri...    29   5.0  
U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical p...    28   8.7  

>Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical
           protein M01B2.3 protein.
          Length = 284

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 238 IDIIFKLNLITVMFYLMMYS*SG*F*FDLVTFF 336
           +D+++ LNL T+MFY ++ S S  F    +TF+
Sbjct: 51  VDVVYTLNLTTLMFYYLLISLSANFIIKNLTFW 83


>U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside
           triphosphatase protein 1 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 552 LLSSIKITQNNYRLSNLFVFFILLYVSL 635
           LL  +++ Q+  ++SN F FF++L + L
Sbjct: 427 LLEQLEVAQSTQQISNFFSFFVILIIVL 454


>U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical
           protein F45F2.1 protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 785 HFGSXTVLSYFENTSFCRMLFMAMDCVFY 699
           +FGS +++    N  FC + F A  C+FY
Sbjct: 140 YFGSTSIIFLTLNVEFCLIAFGACLCLFY 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,413,289
Number of Sequences: 27780
Number of extensions: 286224
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)