Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0936
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   7.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   7.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.8  

>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 758 YFENTSFCRMLFMAMDCVFY*LNKPSNVMNFLIPML 651
           YF N +   M    + C+   +   S  + FL+PML
Sbjct: 236 YFLNMASVFMRIFNLICMMLLIGHWSGCLQFLVPML 271


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 28  NDFCFIKWRL*LFGLQISILFTHG 99
           N F F +W+  LFGL +S L T G
Sbjct: 229 NGFNF-QWKDGLFGLSLSALQTDG 251


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 632 FDIM*KTTLELKNSLHSRAYL 694
           FDI  KT L  KN+++   Y+
Sbjct: 121 FDIFFKTALWAKNNINEAQYI 141


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 632 FDIM*KTTLELKNSLHSRAYL 694
           FDI  KT L  KN+++   Y+
Sbjct: 121 FDIFFKTALWAKNNINEAQYI 141


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 77  ICNPNNYKRHFMKQKSFQNN 18
           I N NNYK ++  + ++ NN
Sbjct: 90  IHNNNNYKYNYNNKYNYNNN 109


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +3

Query: 183 SFIIQCLSMNRFH 221
           SF++ C+SM+R++
Sbjct: 126 SFVLVCISMDRYY 138


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 466 FCNVANIKIQYSRI 507
           FCN+ N+K++  RI
Sbjct: 203 FCNLENVKLKELRI 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,495
Number of Sequences: 438
Number of extensions: 3841
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)