Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0934
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 38 0.002
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 34 0.025
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 32 0.078
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 30 0.41
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 30 0.41
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 30 0.41
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 29 0.72
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 29 0.96
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 29 0.96
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 29 0.96
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 28 1.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 28 1.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 1.7
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 28 1.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.2
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 27 2.9
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 27 2.9
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.9
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 27 3.9
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 26 5.1
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 26 6.7
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 6.7
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 26 6.7
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.7
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 6.7
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.9
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 25 8.9
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 25 8.9
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 8.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 8.9
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 25 8.9
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/98 (25%), Positives = 46/98 (46%)
Frame = +2
Query: 38 GS*KNKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQ 217
GS K+ T ++++M +K E + + Q DA + E+E + L+ I
Sbjct: 357 GSLKDSRTSNSQLEEEMVELK-ESNRTI------HSQLTDAESKLSSFEQENKSLKGSID 409
Query: 218 TIENELDQNTGVFMQVNGKLEEKEKALQNAESEVAALN 331
+N L + QV+ +LEE +L +A ++A +N
Sbjct: 410 EYQNNLSSKDKMVKQVSSQLEEARSSLAHATGKLAEIN 447
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 33.9 bits (74), Expect = 0.025
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 3/149 (2%)
Frame = +2
Query: 77 KKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAE---EEARQLQKKIQTIENELDQNT 247
++K ++ K+E+ + R E Q+K NLR + E ++ R LQ+KI +E +L Q
Sbjct: 17 QQKRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEADLSQKH 76
Query: 248 GVFMQVNGKLEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAAD 427
Q K +E+ Q E + L ++++ ++ K + Q
Sbjct: 77 ATERQKLDKGDEETNETQQ-EDLLNTLLQQMEDTKITTAEKSSVQSSLNTKENTPQQPKK 135
Query: 428 ESERARKVLENRSLADEERMDALENQLRK 514
R ++ LE R ++ + E + K
Sbjct: 136 SRNRQKERLERRKAEMKKMSEQAELESEK 164
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 32.3 bits (70), Expect = 0.078
Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Frame = +2
Query: 50 NKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIEN 229
+K + +A++K+++++K + A+ +Q K+E+E + +K++ +N
Sbjct: 1448 SKNAENEAMQKEIESLKDSNHQLQESASSDAEQITKEQFEQLKSEKE--RTEKELADSKN 1505
Query: 230 ELDQNTGVFMQVNGKLE----EKE------------KALQNAESEVAALNRRIQXXXXXX 361
EL+ + +GK E EKE + +QN +E+AAL R
Sbjct: 1506 ELEHLQSEAVDADGKTEISNLEKEIHELRSDKEGLVQQVQNLSAELAAL--REHSPTQGS 1563
Query: 362 XXXXXXXATATAKLSEASQAADESERARKVLENRS--LADEER-MDALENQLRKPGSSLR 532
A ++L E+++ E E+ ++L RS +A++E+ + LENQL + ++
Sbjct: 1564 LENADEIARLRSQL-ESTKQYYEKEKETEILAARSELVAEKEKTKEELENQLNEKSQRIK 1622
Score = 29.5 bits (63), Expect = 0.55
Identities = 17/76 (22%), Positives = 41/76 (53%)
Frame = +2
Query: 89 QAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQNTGVFMQVN 268
+++ LEK N L+++ + +++KD + +E + LQ+++ + + E+ + N
Sbjct: 718 RSLALEKLNDLEKSLVLSERSKD------ELDESYKSLQEQLASKKIEVQNVSSQLSICN 771
Query: 269 GKLEEKEKALQNAESE 316
+LE+ + N +SE
Sbjct: 772 SQLEQSNHIVDNLKSE 787
Score = 26.6 bits (56), Expect = 3.9
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Frame = +2
Query: 101 LEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQ----TIENELD---QNTGVFM 259
LEKD + + QQ ++NLR + E +++K+ + + E E+ Q + ++M
Sbjct: 243 LEKDALQRKVSSLSQQFTESNLRYQNIVAELSEMRKQYEFSQVSFEKEISSQKQISELWM 302
Query: 260 QVNGKLEEKEKALQNAESEVAAL 328
+ + K LQN+ E+ L
Sbjct: 303 EKCEDCSLRLKELQNSNGELEKL 325
Score = 25.8 bits (54), Expect = 6.7
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +2
Query: 71 AIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQ-NT 247
A+ ++ Q + A R E KD + E+E + L +++Q + +ELD
Sbjct: 463 AMSEQYQKSLEDCQKAKSRYEQLETLFKDKCTENKHYEQETKDLARQVQVLLHELDLCEN 522
Query: 248 GVFMQVNGKLEEK---EKALQNAESE 316
G+ + V+ + + EK+L E++
Sbjct: 523 GIVLGVDSRKKINSYVEKSLTEDETD 548
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 29.9 bits (64), Expect = 0.41
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +2
Query: 173 EKAEEEARQLQKKIQTIENELDQNT-----GVFMQVNGKLEEKEKALQNAESEVAALN 331
EKAE E Q++ + +T EN+ +T V V+ L+ KE+AL +E E++ L+
Sbjct: 5 EKAELENMQVESEAKTSENDQTIDTKVDVADVTTHVDEDLDNKEEALDFSEDELSDLD 62
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 29.9 bits (64), Expect = 0.41
Identities = 20/111 (18%), Positives = 45/111 (40%)
Frame = +2
Query: 200 LQKKIQTIENELDQNTGVFMQVNGKLEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXX 379
L+ K + +EN+L+ T + N E + ++ AE ALN +
Sbjct: 748 LESKNKKLENDLNLLTEKLNKKNADTESFKNTIREAELSKKALNDNLGNKENIISDLKNK 807
Query: 380 XATATAKLSEASQAADESERARKVLENRSLADEERMDALENQLRKPGSSLR 532
+ + +L E ++ + + L R A + + ++E+ + + L+
Sbjct: 808 LSEESTRLQELQSQLNQDKNQIETLNERISAAADELSSMESINKNQANELK 858
Score = 27.1 bits (57), Expect = 2.9
Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 4/156 (2%)
Frame = +2
Query: 77 KKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQNTGVF 256
++K+ +++E D C+Q ++ + E E E + ++ + +LD F
Sbjct: 665 QQKLYDLRIELDYTKSN---CKQMEEEMQVLREGHESEIKDFIEEHSKLTKQLDDIKNQF 721
Query: 257 MQVNGK----LEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAA 424
++ K L E EK+ ++ + +AAL + + A
Sbjct: 722 GIISSKNRDLLSELEKS-KSLNNSLAALESKNKKLENDLNLLTEKLNKKNADTESFKNTI 780
Query: 425 DESERARKVLENRSLADEERMDALENQLRKPGSSLR 532
E+E ++K L + E + L+N+L + + L+
Sbjct: 781 REAELSKKALNDNLGNKENIISDLKNKLSEESTRLQ 816
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 29.9 bits (64), Expect = 0.41
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Frame = +2
Query: 131 AMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQNTGVFMQV-----NGKLEEKEKA 295
A EQQ + E++ Q +++T+ENEL Q GV +Q + +E +
Sbjct: 415 AELEQQLLATRGQLEQSNVLLNQYDARVRTLENELSQ-AGVNLQEQIHQNDDLIESLKNQ 473
Query: 296 LQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERARKVLENRSL 469
+ +++ AL + K S A +A D+ E+ + ++N++L
Sbjct: 474 ILTWKNKYEALAKLYTQLRQEHLDLLSKYKQIQLKASSAQEAIDKKEKMEREMKNKNL 531
Score = 25.8 bits (54), Expect = 6.7
Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 6/152 (3%)
Frame = +2
Query: 155 DANLRAEKAEEEARQLQKKIQTIENELDQNTGVFMQVNGKLEEKEKALQNAESEVAALN- 331
D L A++A ++A Q Q ++ + Q + Q ++E + A Q + + A+
Sbjct: 330 DQQLAAQQAAQQAAQQQAELAA-QQAAAQQAQLAAQQAAEMERQRMAAQQHQQALEAIQM 388
Query: 332 -----RRIQXXXXXXXXXXXXXATATAKLSEASQAADESERARKVLENRSLADEERMDAL 496
+RI A+L + A VL N+ + R+ L
Sbjct: 389 AQAEQQRIAQEQLAQQQFQMQTQGQLAELEQQLLATRGQLEQSNVLLNQY---DARVRTL 445
Query: 497 ENQLRKPGSSLRRPTRNTMRLLVSWPWLRLTW 592
EN+L + G +L+ L+ S LTW
Sbjct: 446 ENELSQAGVNLQEQIHQNDDLIESLKNQILTW 477
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 29.1 bits (62), Expect = 0.72
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +1
Query: 658 VVGNNLKSLEVSEEKANQREEELQKFRFKTSP 753
V G N+ S SEE N KFRF SP
Sbjct: 179 VTGENILSASSSEENLNSNRNGDPKFRFSVSP 210
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 28.7 bits (61), Expect = 0.96
Identities = 26/150 (17%), Positives = 60/150 (40%), Gaps = 10/150 (6%)
Frame = +2
Query: 110 DNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQNTGVFMQVNGKLEEKE 289
D ++ + +A RAE AE + ++++ ++ E E + + +LEE E
Sbjct: 2 DKLREKINAARAETDEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELE 61
Query: 290 KALQN----------AESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESER 439
+ + ++E L+R+++ T K+ + A+ ER
Sbjct: 62 EETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFER 121
Query: 440 ARKVLENRSLADEERMDALENQLRKPGSSL 529
+ LE E++++ + ++ K + L
Sbjct: 122 RVQSLERERDDMEQKLEEMTDKYTKVKAEL 151
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 28.7 bits (61), Expect = 0.96
Identities = 15/82 (18%), Positives = 38/82 (46%)
Frame = +2
Query: 47 KNKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIE 226
++K ++ + + + E D++ + C QAK + +A ++++ ++QTI
Sbjct: 185 RSKDEQVKELNARNAKLLEELDSSEEACKSCYTQAKTWEKKFREALRDSKEYAAQLQTIH 244
Query: 227 NELDQNTGVFMQVNGKLEEKEK 292
E +Q +++ + EK
Sbjct: 245 EEYEQQQAHIVRMEELIHAVEK 266
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 0.96
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 47 KNKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDAN---LRAEKAEEEARQLQKKIQ 217
K T + + K + +K ++ L+ + EQ+ +AN L+ E+ E + ++I
Sbjct: 54 KQSATDSELLHKNLDEIKFLQNEKLNNEKLLEQEQNEANDYRLKVERLEHKISDYVQEIN 113
Query: 218 TIENEL 235
++ ++L
Sbjct: 114 SLNSQL 119
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -3
Query: 491 RPCAPHPPTTCSRAPYVRARIHRRPGWPRTAWRWRSRDAPRTSRGP 354
R +P P SR+PY R RR PR +R RSR SR P
Sbjct: 114 RSRSPSPHEARSRSPYNDERSDRRSMSPR--YRSRSRSPDGRSRSP 157
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 28.3 bits (60), Expect = 1.3
Identities = 30/165 (18%), Positives = 65/165 (39%), Gaps = 7/165 (4%)
Frame = +2
Query: 56 TTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENEL 235
T ++ ++ ++ ++ EKD+ + + +D + + E E RQLQ ++ + EL
Sbjct: 248 TERIRFLENALEKVQREKDS------LSTEMEEDKSNKEVDYEYEIRQLQNRLDELSEEL 301
Query: 236 D-------QNTGVFMQVNGKLEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXATAT 394
D + + ++EEKE + E+E + +Q A
Sbjct: 302 DVAQDLLTEKEDEIATLKRQIEEKENSSSAFENEENSSYVHLQEDYAILQAKCDEFADRI 361
Query: 395 AKLSEASQAADESERARKVLENRSLADEERMDALENQLRKPGSSL 529
L+ + E++ + + L D ++ L+ QL K +
Sbjct: 362 QVLTADLEKEKENQIMHESEASIGLTDSMQVHTLQEQLHKANEEI 406
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = +2
Query: 110 DNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQNTGVFMQVNGKLEEKE 289
D+ A E+ + A+ E+ +EE R+L++KI++ + L+ + ++E+K+
Sbjct: 584 DDQQTTEAPFEEPDEPAHEPTEEEQEEMRKLEEKIESTKYGLETIQTSGKTIKQRIEQKK 643
Query: 290 KALQNAESEVAALN 331
L E+ L+
Sbjct: 644 TRLMILREELQELD 657
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = -1
Query: 703 PSPLRLPEISGCYQRHGAPPQAQRFWIRRTRHAPRRAPSQPQPWPAYEQPHRISCRPP 530
PSP+ LP S Y + PP + P+ A P+ Q +IS PP
Sbjct: 402 PSPMELPSPSTVYHQVFYPPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQTQQISSLPP 459
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/60 (21%), Positives = 32/60 (53%)
Frame = +2
Query: 62 KMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQ 241
K++ + ++ +KLE+ NA + KD + + + +EE + +I ++E ++D+
Sbjct: 3323 KLEPLNSEVDRLKLEQKNAEECIQETIAACKDLDEKLLQLQEEYASMISEIHSMELQMDE 3382
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 119 LDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQNTGVFMQVNGK-LEEKEKA 295
LD AA+ + A + K ++ ++ + + E ++ + + K L+EK K
Sbjct: 26 LDEAAITKPPASKKKRKNRKKKKNNGPSEQFVGNNDLEEQRSGSIDSKDKEKPLDEKVKE 85
Query: 296 LQNAESEVAALNRRIQ 343
L+NA ++ L RRIQ
Sbjct: 86 LENANKTLSDLVRRIQ 101
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/51 (23%), Positives = 32/51 (62%)
Frame = +2
Query: 176 KAEEEARQLQKKIQTIENELDQNTGVFMQVNGKLEEKEKALQNAESEVAAL 328
K +EE LQ ++ + NEL ++ ++ K + +++++++ ESE++++
Sbjct: 141 KLKEENENLQDMLRNVGNELVESRDEIKELIEKQKVQKESVKSHESELSSV 191
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/78 (19%), Positives = 38/78 (48%)
Frame = +2
Query: 59 TKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELD 238
TK A KKK + K +K+N + ++ + ++++ + L +K++ +EN
Sbjct: 32 TKPPASKKKRKNRKKKKNNGPSEQFVGNNDLEEQRSGSIDSKDKEKPLDEKVKELENANK 91
Query: 239 QNTGVFMQVNGKLEEKEK 292
+ + ++ + +E E+
Sbjct: 92 TLSDLVRRIQIQRDEAEQ 109
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 440 RARIHRRPGWPRTAWRWRSRDAPRTSRGPPPAVGYVGSGQPLRTQ 306
RAR H RP R + R + + A G PP+ + SG R +
Sbjct: 81 RARQHERPFRSRKSRRRKGKKAFSPRPGSPPSPSFYRSGSQKRAR 125
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 628 KIVELEEELRVVGNNLKSLEVSEEKANQREEELQK 732
K+ LE + +SLE E+K Q+ EEL+K
Sbjct: 9 KLKSLEYRSKKFDKKSQSLEEHEKKVQQKNEELEK 43
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +2
Query: 77 KKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQL--QKKIQTIE--NELDQN 244
+ ++Q ++ + N +++AAM + K+ + +E ARQL Q K +IE +L
Sbjct: 76 ESQLQQLQQQSFN-MEQAAMTTESLKNTMATVQTMQETARQLKSQSKNVSIEKIEKLQDE 134
Query: 245 TGVFMQVNGKLEE 283
+M G+L E
Sbjct: 135 IQDYMDAAGELNE 147
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 65 MDAIKKKMQAMKLEKDNA-LDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQ 241
++A +K + + L +D L + A+ ++ K+ ++ E EAR+ ++K + NE+D
Sbjct: 13 LEAKNEKPKEVILGEDGKPLSKKAL-KKLEKEREKEQKRKEREAREAEEKKKREANEIDY 71
Query: 242 NTGVF 256
+ G +
Sbjct: 72 SAGKY 76
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.8 bits (54), Expect = 6.7
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = +2
Query: 74 IKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQNTGV 253
+ ++Q + E N ++A A+ NLR + EARQ + E + +
Sbjct: 192 VADELQGQQFENVNQNNQAQAAAAAAQ--NLREVR---EARQRLAMVMEHLRERQEQRNL 246
Query: 254 FMQVNGKLEEKEKALQ 301
+Q NG EE E+A Q
Sbjct: 247 ELQRNGSFEEIERARQ 262
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 6.7
Identities = 23/121 (19%), Positives = 48/121 (39%)
Frame = +2
Query: 173 EKAEEEARQLQKKIQTIENELDQNTGVFMQVNGKLEEKEKALQNAESEVAALNRRIQXXX 352
EKAE EA++ ++ +E E + Q + EEK K +++ A + +
Sbjct: 539 EKAEAEAKRKAEEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAE 598
Query: 353 XXXXXXXXXXATATAKLSEASQAADESERARKVLENRSLADEERMDALENQLRKPGSSLR 532
A A+ +A ++++R + R ++ + +A E R+ +
Sbjct: 599 ENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAK 658
Query: 533 R 535
R
Sbjct: 659 R 659
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 98 KLEKDNALDRAAMCEQQAKDANLRAEKAEEEAR--QLQKK 211
K EK+ +R + + A L A+KA+EEAR +L KK
Sbjct: 25 KTEKELERERQKAAKLEKYHAKLAAKKAKEEARKPKLDKK 64
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/80 (20%), Positives = 35/80 (43%)
Frame = +2
Query: 77 KKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQNTGVF 256
+KK + ++ K+N L+ + Q + + + A++ QK + E ++
Sbjct: 96 RKKRKELESAKNNLLNVYDSLKMQKASVSSMVNRKQRAAKEEQKIQEEFERQITDLLEEQ 155
Query: 257 MQVNGKLEEKEKALQNAESE 316
Q+ ++E E + A SE
Sbjct: 156 QQLKLEIERLEAETERANSE 175
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 77 KKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQ 199
KK A K KDN +A + QQ ++ NL+ + +++++
Sbjct: 181 KKSSDAWKERKDNE-KKAMLMRQQRREENLKKRRESKKSKK 220
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 8.9
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +2
Query: 176 KAEEEARQLQKKIQTIENELDQNTGVFMQVNGK---LEEKEKALQN----AESEVAALNR 334
K E + Q K+ ENE+++ +++NGK L+++EK L+N E +LN
Sbjct: 200 KREAALEEFQSKLLIRENEINKRE---LKMNGKEDDLKKREKDLENRLLKVEEHEKSLNE 256
Query: 335 R 337
R
Sbjct: 257 R 257
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/67 (22%), Positives = 27/67 (40%)
Frame = +2
Query: 47 KNKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIE 226
KN T + + Q+ A + C++QAK EE+ + + K +E
Sbjct: 464 KNAFTTRQKLWQTWQSSVQAVSRAKTQLEKCKKQAKSQQKSLPYLEEQYEKYRAKAADLE 523
Query: 227 NELDQNT 247
E ++T
Sbjct: 524 KEFSEST 530
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 740 NLNFCNSSSRWLAFSSETSRDF 675
+LNFCN+ R L++SS T ++
Sbjct: 303 DLNFCNNFIRKLSWSSSTKSNY 324
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Frame = +1
Query: 562 RKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNL-------KSLEVSEEKANQREE 720
R+L MVE +L + ELE+++ + +NL + L++ EK+ ++ E
Sbjct: 521 RRLRMVEDELHEAINSKNVQQSRSEELEQQISKLTDNLQEYRNTVRELKLDLEKSKKKNE 580
Query: 721 ELQK 732
+L K
Sbjct: 581 DLSK 584
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/97 (17%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Frame = +2
Query: 62 KMDAIKKKMQAMKLEKDNALDRA-------AMCEQQAKDANLRAEKAEEEARQLQKKIQT 220
K D++ ++Q +K K+ ++ A ++ K + +LQ+K+ +
Sbjct: 343 KYDSVVSELQVVKENKNTSVSAGVGLFSPLAQKLSAVQNPEFSFTKVYSDNMKLQQKVSS 402
Query: 221 IENELDQNTGVFMQVNGKLEEKEKALQNAESEVAALN 331
++ +LD+ T F +++++ ++ SE+ N
Sbjct: 403 LKLQLDRLTNKFSSFCEQVKQRIPVVKQQRSEIVRNN 439
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 8.9
Identities = 19/73 (26%), Positives = 38/73 (52%)
Frame = +2
Query: 68 DAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQNT 247
D +K+K++ KLE +N ++ E++ KD + +K + + KKI +NE+D +
Sbjct: 168 DIMKRKLETEKLEANNKEEKE---EKEGKDD--KDDKEDSNDTKNDKKIS--KNEVDSSL 220
Query: 248 GVFMQVNGKLEEK 286
+ G++ K
Sbjct: 221 IEASPLTGQVPPK 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,946
Number of Sequences: 5004
Number of extensions: 38819
Number of successful extensions: 219
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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