Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0934
         (763 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    36   0.001
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    32   0.017
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    28   0.36 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    27   0.63 
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    25   1.9  
AJ439060-14|CAD27765.1|  471|Anopheles gambiae putative acetyltr...    25   3.4  
AY187044-1|AAO39758.1|   87|Anopheles gambiae putative antennal ...    23   7.8  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 4/158 (2%)
 Frame = +2

Query: 80   KKMQAMKLEKDNALDRAA--MCEQQAKDANLRAEKAEEEA--RQLQKKIQTIENELDQNT 247
            KK+Q   L  +  L + A  + E + ++  LR E         +LQK I+  + +LDQ  
Sbjct: 754  KKLQQELLTNEQQLQQLAGVVFEGETEETTLREELEHSRTILAKLQKGIEEEQAKLDQVR 813

Query: 248  GVFMQVNGKLEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAAD 427
                Q     + K+ A+   E+E+A +   I                    L  ++++ +
Sbjct: 814  RTVQQEEQTAQAKKDAMGAVEAEIARIQASIDKEQQARHDLQTNHKVKQQALKRSTESME 873

Query: 428  ESERARKVLENRSLADEERMDALENQLRKPGSSLRRPT 541
            E +R R  L   +  ++ R +A E    +P  S + P+
Sbjct: 874  ERKRTRVALS--AALEQARQEASEKG-ERPDESEQIPS 908



 Score = 27.1 bits (57), Expect = 0.63
 Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
 Frame = +2

Query: 47  KNKTTKMDAIKKKMQAMKLEKD-NALDRAAMCEQQAKDANLRAEKAEEEAR--QLQKKIQ 217
           +N + ++  I+K   A ++E+D    +R  + + + +   +  EKA+ + R  +L   I 
Sbjct: 406 RNASERVTRIQK--DARQIEQDLQERNRDGLSQVEQRKQAVETEKAQLKERNDELASMIA 463

Query: 218 TIENELDQNTGVFMQVNGKLEEKEKALQNAESEVAALNRRIQ 343
           + + E+D        V    EEK       +SE   + ++++
Sbjct: 464 SAQREVDLMYNTMAHVKDAREEKHHERCAKQSETTRIEKQLE 505


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1248

 Score = 32.3 bits (70), Expect = 0.017
 Identities = 27/86 (31%), Positives = 41/86 (47%)
 Frame = -1

Query: 703  PSPLRLPEISGCYQRHGAPPQAQRFWIRRTRHAPRRAPSQPQPWPAYEQPHRISCRPPQR 524
            P PL + E + C+QR+ A P+A R  IRR   A      Q + W A       S    + 
Sbjct: 842  PHPLLIKEDARCHQRYLADPEASRAVIRREERAVTLEVWQ-REWDANASNPGAS----RY 896

Query: 523  GTWLPQLILEGVHALLIRQRPVLEHL 446
              W  +LI E VH+ + ++R  ++ L
Sbjct: 897  ARWAHRLIPE-VHSWMAQKRGEVDFL 921


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 27.9 bits (59), Expect = 0.36
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 188 EARQLQKKIQTIENELDQNTGVFMQVNGKLEEKEKALQNAESEVAALN 331
           E    ++K+Q   NE  + T     V GKL+E   A+Q+  S+   L+
Sbjct: 542 ELETAKQKLQENANEERELTQTLRAVQGKLQESMAAMQSTRSQGKVLD 589



 Score = 27.1 bits (57), Expect = 0.63
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 7/167 (4%)
 Frame = +2

Query: 59   TKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELD 238
            TK++ + K++  +              E+  + +  +    E+E    Q  I+   +E  
Sbjct: 900  TKINGLGKQIDKLSANISKLTVEIKTSERNVQKSKDKINSMEDEVEAAQSAIRKGNDERT 959

Query: 239  QNTGVFMQVNGKLEEKEKALQNA-------ESEVAALNRRIQXXXXXXXXXXXXXATATA 397
            Q      ++  +LEE + A++ A       + E+ AL +R                T   
Sbjct: 960  QLEEEANKLREELEEMKLAIEKAHEGSSSIKKEIVALQKREAEGKMKRLEFEQILQTIET 1019

Query: 398  KLSEASQAADESERARKVLENRSLADEERMDALENQLRKPGSSLRRP 538
            KL E        +   K L+   + +E   + L+    +   S + P
Sbjct: 1020 KLQETKDTLPHWQLQLKPLKLHEIPEEPPQEPLKEYTEEELDSYKLP 1066



 Score = 23.4 bits (48), Expect = 7.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 643  EEELRVVGNNLKSLEVSEEKANQREEELQ 729
            E+E+     N K  EV+    NQ E+E+Q
Sbjct: 1330 EDEVAANVENAKENEVAANVENQNEDEVQ 1358


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 27.1 bits (57), Expect = 0.63
 Identities = 29/161 (18%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
 Frame = +2

Query: 62   KMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRA-----------EKAEEEARQLQK 208
            +++ + KK++ ++     A +    C  + KD   +            + AEE+ ++ +K
Sbjct: 742  EIEELNKKIETLQKTIVEARETQTQCSAKVKDLQAKIADGKGHRERELKSAEEDLKRSKK 801

Query: 209  KIQTIENELDQNTGVFMQVNGKLEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXAT 388
            K +       ++   F  +  ++EE +K +  A+ +   L  +I              A 
Sbjct: 802  KSEESRKNWKKHEQDFETLKLEIEELQKGIVTAKEQAVKLEEQI--------------AA 847

Query: 389  ATAKLSEASQAADESERARKVLENRSLADEERMDALENQLR 511
               +L E S   DE   A   L+ +    +E+M++   +L+
Sbjct: 848  LQQRLVEVSGTTDEMTAAVTALKQQIKQHKEKMNSQSKELK 888


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 27/72 (37%), Positives = 30/72 (41%)
 Frame = +1

Query: 181  RRRGETASEEDPDN*KRARPEHRSLHAG*RKARREGEGSAER*VRSGCPEPTYPTAGGGP 360
            R+R   + EED D  +R     RS     R   R G GS  R  RSG        AG G 
Sbjct: 1047 RKRRIASDEEDSDGSQR-----RS-----RSRSRSGSGSRSR-SRSGSGSRAGSRAGSGS 1095

Query: 361  REVRGASRDRHR 396
            R  R  SR R R
Sbjct: 1096 RS-RSRSRSRSR 1106



 Score = 24.2 bits (50), Expect = 4.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 143 QQAKDANLRAEKAEEEARQLQKKIQTIENE 232
           QQA+    RA K +EE R L++K Q +E E
Sbjct: 821 QQAQYHVSRARKIDEEERSLRQK-QELERE 849


>AJ439060-14|CAD27765.1|  471|Anopheles gambiae putative
           acetyltransferase protein.
          Length = 471

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 473 PPTTCSRAPYVRARIHRRPGWPRTAWRWRSRDAPRT 366
           PP   S  PY+   IHR P       R  + + PR+
Sbjct: 230 PPPPTSNEPYLVVPIHRHPELKEQCVRLINTEWPRS 265


>AY187044-1|AAO39758.1|   87|Anopheles gambiae putative antennal
           carrier protein AP-2 protein.
          Length = 87

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +2

Query: 53  KTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAE----KAEEEARQLQKKI 214
           K    DA  K      L     LD+ A+     KDA  + E    KA+++A ++ KK+
Sbjct: 24  KDAAKDATDKVKDKAALPDAPKLDKDAVTTPDPKDAAKKVEDAAGKAKDQAAEVGKKL 81


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,253
Number of Sequences: 2352
Number of extensions: 10609
Number of successful extensions: 40
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)