Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0931
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    30   0.49 
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   3.5  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   6.1  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 622  MGNRIYSSKKRACNSS-NNEIGYHLKRTMAFINVSTRTSFHNQRLSMLELLIT 467
            M N ++ + +  C S  +N++ + L      I  + +TSF N  L++LELL T
Sbjct: 3979 MSNHLHKNSRIVCLSEIHNQLPHQLLCISRSIVFNKQTSFKNNLLNLLELLPT 4031


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 681 NKKNCYVLQHVKFD*NCVLTMKTTNLLCPVLSFI 782
           +++NC +LQ +     CVL + +T  L   LS I
Sbjct: 830 SRENCRILQSMAIQMGCVLDLSSTKSLLRSLSLI 863


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -3

Query: 691 FFLLLSDVFDGTFPICPESTAIAMGNRIYSSKKRACNSSNNEIGYHLKRTMAFINVSTRT 512
           FF +L        P+  +   +++ N+I +SK+R        +      +  F  + ++ 
Sbjct: 538 FFSILRIRSSEVRPLKSQKNTVSINNKIDTSKRRRKGKRRKRVSDEHSASSNFNEIESQA 597

Query: 511 SF-HNQRLSML 482
           SF  NQ L +L
Sbjct: 598 SFEQNQTLDIL 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,545,750
Number of Sequences: 5004
Number of extensions: 72971
Number of successful extensions: 177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)