Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0931
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical ...    30   2.5  
U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm recept...    29   3.3  
AC024845-7|AAF60849.2|  422|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical
           protein F32D1.3 protein.
          Length = 774

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 254 SRVLYHFRNHIDAKGTYISILVGRPNN-TSECRQGLPPETNQTYD-TLSTYELSL 96
           + +L   +NH++++  Y  ++  +PN+  +    G     NQ YD  L  YE++L
Sbjct: 694 ANLLQQTQNHVESETFYRKVMEAQPNSYAAHANYGAILHLNQKYDLALKEYEIAL 748


>U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm receptor
           protein 1 protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = -3

Query: 541 MAFINVSTRTSFH-NQRLSMLELLITSLAC*RFFEIQSDTQDVATVLTMVSFQLPLPNVN 365
           M F++V +   F  N  ++M +L++TS+   R+   Q++  +   +  ++ F L     +
Sbjct: 207 MIFVSVYSIIYFAVNSYVAMNKLVLTSVNSQRYKANQTELLNALVIQAIIPFALMHFPAS 266

Query: 364 LIFVITIVRCTNYTY 320
           ++F+     C N T+
Sbjct: 267 IVFITPFFNCGNQTF 281


>AC024845-7|AAF60849.2|  422|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.1 protein.
          Length = 422

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/69 (26%), Positives = 26/69 (37%)
 Frame = -3

Query: 661 GTFPICPESTAIAMGNRIYSSKKRACNSSNNEIGYHLKRTMAFINVSTRTSFHNQRLSML 482
           G F     +   A GN   SS    C SSNN  G      +  I++   + +   +L   
Sbjct: 111 GMFGNSRNNDRFAFGNNSSSSSSAGCFSSNNSSGGLFSSILILISIIIPSVYSEPKLPDC 170

Query: 481 ELLITSLAC 455
           E +   L C
Sbjct: 171 EQIPKVLCC 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,595,620
Number of Sequences: 27780
Number of extensions: 409486
Number of successful extensions: 876
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)