Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0930
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   2.4  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   5.5  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    26   7.3  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   9.7  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   9.7  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    25   9.7  

>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = -3

Query: 337 ENPIETSQAVRSVPEGNSFHNSREDQSENDKQNSPD*-RNEWSKIRNSYSDANRHHNQSD 161
           ENP  +  +  +V           + S  D+   PD  ++   K   S +D  + HN+ D
Sbjct: 18  ENPESSGHSRVAVIRKQKTEQENNNLSWEDRHYIPDLHKSNKIKTPTSLADEKKSHNELD 77

Query: 160 PDAVFGKILLSSKPVTDVVP 101
           P A   K++ +    T + P
Sbjct: 78  PKAQIKKLMETRSGGTYIPP 97


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 223 FFSRGCSAYHSRIDLPCYYGNCYLLGP 303
           FFS GC AY S I LP      +LLGP
Sbjct: 544 FFSIGCVAYQSFIPLP------FLLGP 564


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 193 SDANRHHNQSDPDAVFGKILLSSKPVTDVVPNDFH 89
           S AN+       +++  KI    KP++D++ ND H
Sbjct: 194 SHANKSVKLEHKNSIEKKISNVDKPISDLIENDIH 228


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -3

Query: 364 EGDHEYVFPENPIETSQAVRSVPEGNSFHNSREDQSENDKQNS 236
           +GD E +  ++P+E S+ V  +  G+  + S  D+S++++  +
Sbjct: 147 QGDVETIASQSPLELSKLVEQI-SGSLEYKSEYDKSKDEQDKA 188


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 700 MAAKFLGLNKSVTKYNQCSTITAHNTFKTTSKY 602
           + +K L LN S     QC  ++ HNT    S Y
Sbjct: 785 LLSKPLQLNSSEEMEQQCIDLSRHNTLLNLSSY 817


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -1

Query: 357 IMNTFFQRTQLKR--PKPFGRSQKVTVSIIAGKINPRMISRTAPTKEMNGPR 208
           ++NT +  T+      K +G S  VTV   A  I    ISR   T+  NGPR
Sbjct: 322 VLNTLYAVTKNAEGWSKQYG-SSPVTVDSAAANIVSSGISRVILTRVGNGPR 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,480,753
Number of Sequences: 5004
Number of extensions: 76469
Number of successful extensions: 210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)