Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0930
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871     29   5.8  
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453...    29   5.8  
02_01_0225 - 1469295-1469733,1472352-1472767,1473603-1473658,147...    28   7.7  

>11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871
          Length = 148

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -3

Query: 340 PENPIETSQAVRSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQSD 161
           P + +  +  + +V E N   +S+ D  + +K          +K+ +S + + +  +   
Sbjct: 33  PRDALAKAATITTVIEDNIATSSKADDGKTEKHTGATSSTVSAKVEDSITVSGKVSDSPY 92

Query: 160 PDAVFGKI--LLSSKPVTDVVP 101
            +AVFGK+    +S P+T   P
Sbjct: 93  QNAVFGKVDDPTASLPMTTTPP 114


>03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,
            4535753-4535809,4535940-4536280,4536979-4537047,
            4537152-4537219,4537404-4539569,4540101-4540178,
            4540326-4540437,4540722-4540772,4540886-4540936
          Length = 1178

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 315  KPFGRSQKVTVSIIAGKINPRMISRTAPTKEMNGPRSGIAIAMQTVIT 172
            KP  R  +V V ++  ++ P+ I +T P    NG R+ I    Q  I+
Sbjct: 983  KPGKRETRVQVGML-DQVGPKKIGKTTPKLPQNGSRNAIGSRTQKSIS 1029


>02_01_0225 -
           1469295-1469733,1472352-1472767,1473603-1473658,
           1473827-1473995
          Length = 359

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 235 PD*RNEWSKIRNSYSDANRHHNQSDPDAVFGKILLSSKP 119
           P  ++  S    S   +N  +N SDPD  F + + S+KP
Sbjct: 100 PGSQSRTSAAAGSSGPSNFRYNPSDPDDFFAEFMASNKP 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,780,029
Number of Sequences: 37544
Number of extensions: 427530
Number of successful extensions: 953
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)