Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0930
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    29   0.068
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    29   0.068
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    25   0.63 
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    25   0.63 
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    25   0.63 
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    25   0.63 
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    25   0.63 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    25   0.83 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.83 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   5.9  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   5.9  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   5.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   5.9  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 0.068
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 321 RPKPFGRSQKVTVSIIAGKINPRMISRTAPTKEMNGPRSGIA 196
           +PKP    ++++  II G +N      T P +E +GP   I+
Sbjct: 42  KPKPLWTGKQISSLIIPGNVNMIRTHSTXPXEEDDGPYKWIS 83


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 0.068
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQSDPDAVFGKILLS 128
           RS    NS+   RE   E  +      R+   KI +S S+   H+N  +    +  I + 
Sbjct: 281 RSYKNENSYRKYRETSKERSRDRIERERSREPKIISSLSNNTIHNNNYNKKLYYNIINIE 340

Query: 127 SKPVTDVVP 101
             PV   VP
Sbjct: 341 QIPVPVPVP 349


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQSD 161
           +S    NS+   RE   E  +      R++  KI +S S+   H+N ++
Sbjct: 48  KSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNN 96


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQSD 161
           +S    NS+   RE   E  +      R++  KI +S S+   H+N ++
Sbjct: 48  KSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNN 96


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQSD 161
           +S    NS+   RE   E  +      R++  KI +S S+   H+N ++
Sbjct: 48  KSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNN 96


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQSD 161
           +S    NS+   RE   E  +      R++  KI +S S+   H+N ++
Sbjct: 48  KSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNN 96


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQSD 161
           +S    NS+   RE   E  +      R++  KI +S S+   H+N ++
Sbjct: 281 KSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNN 329


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQS 164
           +S    NS+   RE   E  +  +   R+   KI +S S+   H+N +
Sbjct: 48  KSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLSNKTIHNNNN 95


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQS 164
           +S    NS+   RE   E  +  +   R+   KI +S S+   H+N +
Sbjct: 281 KSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLSNKTIHNNNN 328


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQS 164
           +S    NS+   RE   E  +  +   R+   KI +S S+   H+N +
Sbjct: 48  KSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLSNRTIHNNNN 95


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQS 164
           +S    NS+   RE   E  +  +   R+   KI +S S+   H+N +
Sbjct: 48  KSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLSNKTIHNNNN 95


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQS 164
           +S    NS+   RE   E  +  +   R+   KI +S S+   H+N +
Sbjct: 48  KSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLSNKTIHNNNN 95


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQS 164
           +S    NS+   RE   E  +  +   R+   KI +S S+   H+N +
Sbjct: 48  KSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLSNKTIHNNNN 95


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQS 164
           +S    NS+   RE   E  +  +   R+   KI +S  +   H+N +
Sbjct: 270 KSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNN 317


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQS 164
           +S    NS+   RE   E  +  +   R+   KI +S  +   H+N +
Sbjct: 281 KSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNN 328


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQS 164
           +S    NS+   RE   E  +  +   R+   KI +S  +   H+N +
Sbjct: 281 KSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNN 328


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 307 RSVPEGNSFHNSREDQSENDKQNSPD*RNEWSKIRNSYSDANRHHNQS 164
           +S    NS+   RE   E  +  +   R+   KI +S  +   H+N +
Sbjct: 270 KSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNN 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,837
Number of Sequences: 438
Number of extensions: 5627
Number of successful extensions: 41
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)