Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0929
         (840 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    42   0.015
UniRef50_Q4AFI8 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding;...    34   5.1  
UniRef50_A0E8Y2 Cluster: Chromosome undetermined scaffold_83, wh...    33   8.9  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 42.3 bits (95), Expect = 0.015
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -3

Query: 472 HRHSPLSFSPDLLSGSRFRSGGRF 401
           HR  PLSFSPDLLSGSRFR+G  +
Sbjct: 392 HRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_Q4AFI8 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding;
           n=1; Chlorobium phaeobacteroides BS1|Rep: 4Fe-4S
           ferredoxin, iron-sulfur binding - Chlorobium
           phaeobacteroides BS1
          Length = 235

 Score = 33.9 bits (74), Expect = 5.1
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 614 KRQCDVIDASCKLIAWSSCVCACVSNAWQCTSYFFFIDLM*KCRVDRTKIRVDPT-ILSV 790
           K+ C+V    C L     CV AC  +A + TS+  +ID   KC + R  + V PT  +  
Sbjct: 131 KKNCEVACIGCSL-----CVKACAFDAIKITSFLAYIDFD-KCTLCRKCVEVCPTSAIHE 184

Query: 791 KNYNPKQ 811
            N+ P++
Sbjct: 185 INFKPRK 191


>UniRef50_A0E8Y2 Cluster: Chromosome undetermined scaffold_83, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_83,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 213

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 380 RTSVSNTPG*NPVSLPPRQGEAEIDSQGYQHR 285
           +T+   TP  NPV+LPP  GE +  SQ  +H+
Sbjct: 143 KTAKYQTPATNPVNLPPTPGELKERSQSLEHK 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,414,419
Number of Sequences: 1657284
Number of extensions: 12572214
Number of successful extensions: 24902
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24884
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73373641369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)