Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0929
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    26   5.8  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    26   5.8  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    26   7.6  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   7.6  

>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 755 TKIRVDPTILSVKNYNPKQYF 817
           TKIR  PT +S+++  PKQ F
Sbjct: 48  TKIRSPPTRVSIESITPKQRF 68


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 590 RYDFKNVNKCLLDFTLLNVNVGSTLHF 510
           RY F     C LD +++    GS +HF
Sbjct: 551 RYGFSKALTCSLDDSIIGFGYGSCMHF 577


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 272 FFPPTYADSLESLFQLLLDV 331
           F PP Y D+ E L  LLL V
Sbjct: 236 FLPPAYNDTAEELADLLLQV 255


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 472 GLTDFIQIICYFEKCRVDPTLTLSKVKSN 558
           GL DF+Q +    +C V+P LT +K+++N
Sbjct: 403 GLIDFLQALSSTFECMVNP-LTNNKIQAN 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,859
Number of Sequences: 5004
Number of extensions: 55623
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)