Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0928
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...   111   1e-25
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    27   1.5  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    27   2.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   3.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   4.7  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.2  

>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score =  111 bits (266), Expect = 1e-25
 Identities = 57/79 (72%), Positives = 64/79 (81%)
 Frame = +3

Query: 255 TIALALGVERTKSELIPFLTETIYXEDEVLLALAEQLGSFINLVGGGEFAHCLLPPLETL 434
           TIALALG ERT+ ELIPFL E+I  EDEVL ALA+QLG+F++ VGG E+AH LL PLE L
Sbjct: 37  TIALALGPERTRDELIPFLDESIDDEDEVLSALADQLGNFVDYVGGPEYAHVLLSPLENL 96

Query: 435 AAVEETVVRDKAVASLRAV 491
           AA EETVVRDKAV SL  V
Sbjct: 97  AATEETVVRDKAVDSLNKV 115



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 17/27 (62%), Positives = 24/27 (88%)
 Frame = +1

Query: 175 LYPIAVLIDELKNEDVQLRLNSIXKLS 255
           LYPIAVLIDELK++++  RLN++ +LS
Sbjct: 10  LYPIAVLIDELKHDEITYRLNALERLS 36


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 457 SEIRQWLHSVPLPSTTAPSTRGTL 528
           +E+R WLH V +P ++  STR  L
Sbjct: 193 NELRTWLHDVGVPISSHESTRSHL 216


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -3

Query: 204 LIYENGNRIQ*FIRPGVARCHXYLLSFVLISIQSIRTQILTITFLCKIYQNEFFVK 37
           LI++  N +   +RPG        L  +  + QS R  +  I+ +CK YQ +  ++
Sbjct: 197 LIWKLANELVDPVRPGDFNQALMELGAITCTPQSPRCSVCPISEICKAYQEQNVIR 252


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 274 PRANAIVTTSX*SSNEAVHPHSSAHL 197
           P+AN +  T   SS+   H H+S HL
Sbjct: 104 PKANKVEVTDLPSSSSVEHLHTSKHL 129


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 240 YXEVVTIALALGVERTKSELIPFLTETIYXEDEVL 344
           Y E+  + L   +E+ K E++PFL    Y  +EVL
Sbjct: 469 YQEI--LVLKSSIEKEKVEIVPFLDIRKYSPNEVL 501


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 285 TKSELIPFLTETIYXEDEVLLALAEQLGS-FINLVGGGEFAHCLLPPLETL 434
           T  E IPF  +     D+   A+   L   F NLV  GE A+CL   LE +
Sbjct: 611 TLIEQIPFFLQKRDISDDSKDAVLSWLSDLFSNLVCTGEDANCLFHLLENV 661


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,928
Number of Sequences: 5004
Number of extensions: 34496
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)