Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0928
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a ...   126   1e-29
U39997-2|AAK68388.1|  378|Caenorhabditis elegans Dehydrogenases,...    27   7.5  
AF043699-7|AAK84627.1|  927|Caenorhabditis elegans Dipeptidyl pe...    27   7.5  
AF043699-6|AAB97564.1|  931|Caenorhabditis elegans Dipeptidyl pe...    27   7.5  
AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    27   7.5  
AF016440-6|AAN84798.1|  525|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF016440-5|AAB65904.2|  535|Caenorhabditis elegans Hypothetical ...    27   10.0 

>U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a
           regulatory a subunitprotein 1 protein.
          Length = 590

 Score =  126 bits (304), Expect = 1e-29
 Identities = 63/84 (75%), Positives = 70/84 (83%)
 Frame = +3

Query: 255 TIALALGVERTKSELIPFLTETIYXEDEVLLALAEQLGSFINLVGGGEFAHCLLPPLETL 434
           TIALALGVERT++ELI FLT+TIY EDEVLL LAEQLG+F  LVGG +  HCLL PLE L
Sbjct: 39  TIALALGVERTRNELIQFLTDTIYDEDEVLLVLAEQLGNFTPLVGGPDHVHCLLLPLENL 98

Query: 435 AAVEETVVRDKAVASLRAVAEHHS 506
           A VEETVVRDKAV SLR +A+ HS
Sbjct: 99  ATVEETVVRDKAVESLRKIADKHS 122



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 27/38 (71%), Positives = 32/38 (84%)
 Frame = +1

Query: 142 MAAXDSGTDESLYPIAVLIDELKNEDVQLRLNSIXKLS 255
           M+  +  TD++LYPIAVLIDEL+NEDV LRLNSI KLS
Sbjct: 1   MSVVEEATDDALYPIAVLIDELRNEDVTLRLNSIRKLS 38


>U39997-2|AAK68388.1|  378|Caenorhabditis elegans Dehydrogenases,
           short chain protein5 protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 375 INLVGGGEFAHCLLPPLETLAAVEETVV-RDKAVASLRAVAEHHSPKHSRNTLC 533
           +N +G  EF  C+LPP+E     +  V+   + V  +  +A + + K     LC
Sbjct: 196 VNGMGAAEFLSCVLPPMEKSGGGQIVVLSSSQGVRPIPMLAAYCATKALMTFLC 249


>AF043699-7|AAK84627.1|  927|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 3, isoform b protein.
          Length = 927

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 585 DVLESEPVSSQQGAVTSGTK-CSSSA 511
           D   +EP+   +G++TSGTK CS+ A
Sbjct: 192 DQSSTEPMDISEGSITSGTKGCSNEA 217


>AF043699-6|AAB97564.1|  931|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 3, isoform a protein.
          Length = 931

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 585 DVLESEPVSSQQGAVTSGTK-CSSSA 511
           D   +EP+   +G++TSGTK CS+ A
Sbjct: 196 DQSSTEPMDISEGSITSGTKGCSNEA 221


>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 390 GGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEH 500
           GG+ A+C  P   ++ AV   V  ++ VA  R V  H
Sbjct: 262 GGDAAYCPCPARSSVMAVNRRVAVNRNVARNRVVVRH 298


>AF016440-6|AAN84798.1|  525|Caenorhabditis elegans Hypothetical
           protein F29G9.2b protein.
          Length = 525

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 475 LHSVPLPSTTAPSTRGTLCATSNS 546
           L  VP+PS+T PS+ G+  ++S+S
Sbjct: 19  LRHVPMPSSTTPSSIGSSSSSSSS 42


>AF016440-5|AAB65904.2|  535|Caenorhabditis elegans Hypothetical
           protein F29G9.2a protein.
          Length = 535

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 475 LHSVPLPSTTAPSTRGTLCATSNS 546
           L  VP+PS+T PS+ G+  ++S+S
Sbjct: 29  LRHVPMPSSTTPSSIGSSSSSSSS 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,490,667
Number of Sequences: 27780
Number of extensions: 197406
Number of successful extensions: 818
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)