Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0927
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    27   2.3  
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    26   5.4  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   7.1  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   9.4  

>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +3

Query: 510 SIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDSSDSITFA 689
           ++RK + +AS+R    A  HD+++I   A     PD         P H L    +  T++
Sbjct: 321 NLRKGVNNASDRKVFLAFTHDSQIIPVEAALGFFPDIT-------PEHPLPTDKNIFTYS 373

Query: 690 LEAFSF 707
           L+  SF
Sbjct: 374 LKTSSF 379


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 513 IRKYMKSASERYFDKAMRHDNRLI 584
           IRKY+++  E  FDK  +  ++LI
Sbjct: 98  IRKYLETIEENEFDKVRKSSDKLI 121


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 589 PPLTTPRILIMQEPVTVDALDTSLRIHQIQ*PLH*RP 699
           PP+ +PR     +PV V+A+  S  +   Q PLH  P
Sbjct: 270 PPIPSPR---PPQPVAVEAIQQSRAVISQQLPLHVSP 303


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 289 PMICKRSKMSLRNKVTLYK 345
           P ICK ++++L+N +TL K
Sbjct: 63  PTICKGNEIALKNNITLEK 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,797
Number of Sequences: 5004
Number of extensions: 60816
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)