Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0927
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    36   0.033
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    34   0.13 
AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical ...    31   0.71 
AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical ...    31   0.71 
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    31   0.94 
Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF039044-12|AAG24130.2|  405|Caenorhabditis elegans Hypothetical...    29   5.0  
Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = +1

Query: 280 RLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCR 447
           +L  M  K S  + +  + LYKT IRP + Y +VV +   ++   T++S+Q+ F R
Sbjct: 204 QLANMFNKYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +1

Query: 226 DIPPAYKISPDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAART 405
           D    +K S + A F L  ++      +K  +   + LYKT IRP + Y +VV +   ++
Sbjct: 159 DFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---ILLYKTFIRPRLEYGTVVSSPTKKS 215

Query: 406 HIDTLQSLQSRFCR 447
               ++S+Q+ F R
Sbjct: 216 DEKAIESVQNAFTR 229


>AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2b protein.
          Length = 753

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +3

Query: 462 SVVRKER*PTRRPGPRSIRKYMKSASERYFDKAMRHD--NRLIVAAADYSPNPDHAGASH 635
           S  R ++  T  P    IR + +S +  Y D A  +   +R   + A + P P    + H
Sbjct: 175 SNARNQKNETVHPSTDGIRSFQQSPTSSYNDSAQPNYELSRTTYSPASHRPTPTKDYSDH 234

Query: 636 RRRPRHVLTDSSDS 677
           R +P +  T    S
Sbjct: 235 REKPYNTATSHQSS 248


>AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2a protein.
          Length = 772

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +3

Query: 462 SVVRKER*PTRRPGPRSIRKYMKSASERYFDKAMRHD--NRLIVAAADYSPNPDHAGASH 635
           S  R ++  T  P    IR + +S +  Y D A  +   +R   + A + P P    + H
Sbjct: 175 SNARNQKNETVHPSTDGIRSFQQSPTSSYNDSAQPNYELSRTTYSPASHRPTPTKDYSDH 234

Query: 636 RRRPRHVLTDSSDS 677
           R +P +  T    S
Sbjct: 235 REKPYNTATSHQSS 248


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 170 PIPWARKVKYLGVTLDASMTFRPHIKSVLTVPRL 271
           PI  +   + LG+  D+ +TF+PHIK ++++  L
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKIVSLALL 221


>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
           protein C31E10.8 protein.
          Length = 1272

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +3

Query: 501 GPRSIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDSSDSI 680
           GP     ++ + +ERYFDK    D+ L  A AD           H +  +H+ +   D  
Sbjct: 485 GPEDAFWFLIAVTERYFDKTY-FDSNLTGAQADQEVLKGLLEVQHPKIMKHLKSLDIDVA 543

Query: 681 TFALEAF 701
           +F L  F
Sbjct: 544 SFTLNWF 550


>AF039044-12|AAG24130.2|  405|Caenorhabditis elegans Hypothetical
           protein F48G7.11 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +1

Query: 259 RAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSR 438
           RA     +   M+C+R   SL++++   K C R  M Y + +  +  +T  D + S  SR
Sbjct: 37  RAVMRSAKSQDMVCERESCSLKDRIQCCKIC-RLKMCYDAGMDPNKFQTGRDLISS-SSR 94

Query: 439 FCRL-AVGAPWFVRN 480
              L +VG+P  + N
Sbjct: 95  SSNLSSVGSPQSLAN 109


>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 500 WASINSEIHEVSVG-TILR*GYAS 568
           WA IN+E+HE++V  T  + GY S
Sbjct: 63  WAEINNEVHEITVNRTARQAGYTS 86


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 606 PNPDHAGASHRRRPRHVLTDSSDS 677
           PN DH G +H RR R+   D SD+
Sbjct: 242 PNVDHIGHNHHRRKRNHDDDPSDT 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,208,464
Number of Sequences: 27780
Number of extensions: 360822
Number of successful extensions: 778
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)