Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0925
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 109 6e-25
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 107 2e-24
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 84 2e-17
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 82 8e-17
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 81 2e-16
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 62 1e-10
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 33 0.047
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 30 0.33
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 28 1.3
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 28 1.3
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 28 1.8
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 26 7.2
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.5
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 109 bits (261), Expect = 6e-25
Identities = 49/78 (62%), Positives = 59/78 (75%)
Frame = +1
Query: 4 EEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFA 183
+EKW EV HFC N+PI+LVG K DLRNDP TI EL K Q+P+ +EG+ +A+KI A+
Sbjct: 97 QEKWISEVLHFCSNLPILLVGCKVDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYK 156
Query: 184 YLECSAKSKEGVREVFET 237
YLECSAK EGV EVFET
Sbjct: 157 YLECSAKLNEGVNEVFET 174
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 107 bits (256), Expect = 2e-24
Identities = 48/78 (61%), Positives = 59/78 (75%)
Frame = +1
Query: 4 EEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFA 183
+EKW EV HFC ++PI+LV K DLRNDP I EL K Q PV +EG+A+A+KI A+
Sbjct: 97 QEKWISEVLHFCSSLPILLVACKADLRNDPKIIEELSKTNQHPVTTEEGQAVAQKIGAYK 156
Query: 184 YLECSAKSKEGVREVFET 237
YLECSAK+ EGVREVFE+
Sbjct: 157 YLECSAKTNEGVREVFES 174
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 84.2 bits (199), Expect = 2e-17
Identities = 37/75 (49%), Positives = 50/75 (66%)
Frame = +1
Query: 10 KWTPEVKHFCPNVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYL 189
KW E+ CPNVP ILVG K DLR+DP I E+R+ Q VK Q+ +A++I A Y+
Sbjct: 101 KWIEEINTLCPNVPFILVGMKADLRSDPVAIEEMRRRNQNFVKSQQAELVAQRIGARKYM 160
Query: 190 ECSAKSKEGVREVFE 234
ECS+ + +GV +VFE
Sbjct: 161 ECSSLTGDGVDDVFE 175
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 82.2 bits (194), Expect = 8e-17
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = +1
Query: 4 EEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFA 183
+EKW PEV H CP VP ++VG + DLR+DP+ +L + Q P+ ++G +A ++ A
Sbjct: 94 KEKWFPEVHHHCPGVPCLIVGTQIDLRDDPSVQQKLARQHQHPLTHEQGERLARELGAVK 153
Query: 184 YLECSAKSKEGVREVFE 234
Y+ECSA +++G++ VF+
Sbjct: 154 YVECSALTQKGLKNVFD 170
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 80.6 bits (190), Expect = 2e-16
Identities = 39/76 (51%), Positives = 48/76 (63%)
Frame = +1
Query: 7 EKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAY 186
EKW PEV+HFCP PI+LVG K DLR D LR PV Q+ +++A +NA Y
Sbjct: 108 EKWYPEVQHFCPRTPIVLVGLKADLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNA-PY 166
Query: 187 LECSAKSKEGVREVFE 234
+ECSAK GV EVF+
Sbjct: 167 VECSAKENTGVNEVFQ 182
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 61.7 bits (143), Expect = 1e-10
Identities = 34/74 (45%), Positives = 42/74 (56%)
Frame = +1
Query: 10 KWTPEVKHFCPNVPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYL 189
KW PEV CP V ++LV K DLR +E + + + +EG A A+KINA YL
Sbjct: 106 KWLPEVSSNCPGVKLVLVALKCDLRG----ADEEQVDHSKIIDYEEGLAAAKKINAVRYL 161
Query: 190 ECSAKSKEGVREVF 231
ECSAK GV E F
Sbjct: 162 ECSAKLNRGVNEAF 175
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 33.1 bits (72), Expect = 0.047
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +1
Query: 46 VPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRE 225
VPI++VGNK DL Q V +EG+A+A + A+ E SA+ E V
Sbjct: 112 VPIVVVGNKSDLH------------MQRAVTAEEGKALANEWKC-AWTEASARHNENVAR 158
Query: 226 VFE 234
FE
Sbjct: 159 AFE 161
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 30.3 bits (65), Expect = 0.33
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 13 WTPEVKHFCPNVPIILVGNKKDLR 84
W ++ C N+PI+L GNK D++
Sbjct: 103 WWRDLVRVCENIPIVLCGNKVDVK 126
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +1
Query: 49 PIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREV 228
P IL+GNK D + E ++M V + A + Y E SAK V+E
Sbjct: 119 PFILLGNKVD-------VEEQKRM----VSKSKALAFCQARGEIPYFETSAKEAINVQEA 167
Query: 229 FET 237
FET
Sbjct: 168 FET 170
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 491 NRYLYIYSLSINLSINALTICQGRLWTPCLHG-SIKIF 601
N ++YSL +INAL R W G SI+IF
Sbjct: 222 NESTHLYSLEAKANINALVFSPNRYWLCAATGSSIRIF 259
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 27.9 bits (59), Expect = 1.8
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 7 EKWTPEVKHFCPN-VPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFA 183
+ W E++ P + I L GNK DL + + V+ + A A + N
Sbjct: 107 KSWIKELQRQAPEGIVIALAGNKLDLAQE-----------RRAVEKADAEAYAAEANLL- 154
Query: 184 YLECSAKSKEGVREVF 231
+ E SAK+ E V E+F
Sbjct: 155 FFETSAKTAENVNELF 170
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 617 LYNRVAFLQHRYIIPRPVSSH 679
LY + L H++I+P P SSH
Sbjct: 178 LYAPLHKLHHKWIVPTPYSSH 198
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 100 INELRKMKQEPVKPQEGRAMAEKINAF 180
+++ +K K+ P KP+E + + +N+F
Sbjct: 388 VDDNKKKKKGPAKPKEKATLGKTVNSF 414
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,968
Number of Sequences: 5004
Number of extensions: 64083
Number of successful extensions: 176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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