Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0924
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 153 2e-38
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 69 4e-13
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 60 3e-10
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 57 2e-09
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 52 9e-08
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 52 9e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 50 3e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 49 5e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 47 2e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 47 3e-06
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 6e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 1e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 45 1e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 2e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 2e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 43 3e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 43 3e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 42 5e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 42 7e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 42 7e-05
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 42 1e-04
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 41 1e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 41 2e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 2e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.002
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 38 0.002
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 38 0.002
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.005
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 36 0.005
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 36 0.006
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.014
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 33 0.025
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.044
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.077
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.13
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 31 0.13
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.23
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.31
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.41
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 29 0.72
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.3
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 28 1.3
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 1.3
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 1.7
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 27 2.2
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 2.9
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 5.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 6.7
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 8.8
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 8.8
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 8.8
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 153 bits (371), Expect = 2e-38
Identities = 72/161 (44%), Positives = 105/161 (65%), Gaps = 5/161 (3%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 182
F+GGL+WETTD LRD+F +GE+ V D TGRSRGF F+ FK P+ +++VM+ E
Sbjct: 166 FIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-E 224
Query: 183 HTINNKKVDPKKAKARH-----GKIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTK 347
H ++ K +DPK+A R K+FVG + + +++E RNFF++FG +L+ + DK
Sbjct: 225 HHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDT 284
Query: 348 NQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 470
+ +GF F+T+E+E V + P TI GK V+VKRATPK
Sbjct: 285 GRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 68.1 bits (159), Expect = 1e-12
Identities = 29/79 (36%), Positives = 54/79 (68%)
Frame = +3
Query: 234 GKIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 413
GK+F+G L+ E +DD +R++F +FG +L+ + D T + +GF F+TF++ + VN+++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM- 221
Query: 414 TPKRTIGGKEVDVKRATPK 470
+ + + GK +D KRA P+
Sbjct: 222 SKEHHLDGKIIDPKRAIPR 240
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 69.3 bits (162), Expect = 4e-13
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 23/179 (12%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-G 179
FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ PE+ +AA G
Sbjct: 266 FVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANG 325
Query: 180 EHTINNKKV-----DPKK------AKARHGK-----------IFVGELSSEISDDEIRNF 293
I+ + V +P+ A+ R G +FVG LS ++D++
Sbjct: 326 TKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTA 385
Query: 294 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 470
F G I + +P D + KGF ++TF ++ I G+ + +TP+
Sbjct: 386 FGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN-DLLKT 416
+FVG LS + D + F E+GTI+ + D + KG+ ++ FE+ + +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 417 PKRTIGGKEVDVKRATPK 470
+ I G+ V++ + P+
Sbjct: 325 GTKEIDGRMVNLDLSNPR 342
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 59.7 bits (138), Expect = 3e-10
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 8/141 (5%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 182
+VG L T+ L + F + G + SI V D T RS G+A++ F E +K +
Sbjct: 83 YVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELN 142
Query: 183 HTINN--------KKVDPKKAKARHGKIFVGELSSEISDDEIRNFFSEFGTILEVEMPFD 338
+T+ + DP K G +F+ L I + + + FS FG IL ++ D
Sbjct: 143 YTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD 202
Query: 339 KTKNQRKGFCFITFESEQVVN 401
+ N KG+ F+ F+S + N
Sbjct: 203 ELGN-AKGYGFVHFDSVESAN 222
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 170
F+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 367 FIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 182
FVG L +ETTD +L++HFG G+I + + T +TG+ +GF F+ F ++ K M G
Sbjct: 231 FVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGH 290
Query: 183 HT 188
++
Sbjct: 291 NS 292
Score = 33.1 bits (72), Expect = 0.033
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 380
+FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 51.6 bits (118), Expect = 9e-08
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +3
Query: 180 EHTINNKKVDPKKAKARHGKIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 359
E TI K + K + + G ++VG L + ++R +FS+FG +L + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 360 GFCFITFESEQVVNDLLKT 416
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 51.6 bits (118), Expect = 9e-08
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Frame = +3
Query: 150 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGELSSEISDDEIRNFFSEFGTILEVEM 329
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+ +V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 330 PFDKTKNQRK----GFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATP 467
PF + + + G F+TF +++ V+ ++T +T+ +E+ V++A P
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARP 126
Score = 33.9 bits (74), Expect = 0.019
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR----GFAFIVFKAPESIDKVM 170
FVG LS T E+R F G + + + +R G AF+ F E +DK +
Sbjct: 47 FVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAI 106
Query: 171 AAGEHTINNKKVDPKK 218
T+N K +D ++
Sbjct: 107 ----ETLNGKTLDDRE 118
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 50.0 bits (114), Expect = 3e-07
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 182
FVG L++E ++ L +FG G I+ + + DP T +GFA+I FK +DK + E
Sbjct: 273 FVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
Score = 39.9 bits (89), Expect = 3e-04
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND-LLKT 416
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ LL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 417 PKRTIGGKEVDVKRA 461
K+ G+ + + RA
Sbjct: 332 EKKMPEGRTLRIMRA 346
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 49.2 bits (112), Expect = 5e-07
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 182
+VG + + T +EL+ HF + G + + + D TG +GFA+I F P + +
Sbjct: 58 YVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNG 117
Query: 183 HTINNK--KVDPKK 218
++ + KV PK+
Sbjct: 118 SMLHERPLKVTPKR 131
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 410
++VG + ++ +E+++ F+ G++ V + DK KGF +I F +V + L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 237 KIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLK 413
++F+ L+ ++D++++ F FG + +V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 414 TPKRTIGGKEVDV 452
+ G+ + V
Sbjct: 384 LDAKPFQGRLLHV 396
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 46.8 bits (106), Expect = 3e-06
Identities = 22/79 (27%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +3
Query: 231 HGKIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDL 407
H ++FVG L ++++D+ + FSE+ ++++ ++ D+ + + +GF F++F +S+Q +
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAW 87
Query: 408 LKTPKRTIGGKEVDVKRAT 464
+ + IG + V + RAT
Sbjct: 88 REKNGKYIGSRPVKLSRAT 106
Score = 36.3 bits (80), Expect = 0.004
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 182
FVG L + D+ L F Y + V D G++RGF F+ FK D+ + A
Sbjct: 33 FVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK---DSDQFLKAWR 88
Query: 183 HTINNKKVD--PKKAKARHGKIFVGELSSEISDDEIRN 290
N K + P K + E++ + D +IRN
Sbjct: 89 EK-NGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRN 125
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 45.6 bits (103), Expect = 6e-06
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMAA 176
FVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+ F P++ I K +
Sbjct: 95 FVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKF 154
Query: 177 GEHTI-NNKKVDPKKAKARHGK 239
HTI +K++ + GK
Sbjct: 155 -HHTIYKERKINIELTAGGGGK 175
Score = 42.7 bits (96), Expect = 4e-05
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +3
Query: 180 EHTINNKKVDPKKAKARHGK-------IFVGELSSEISDDEIRNFFSEFGTILEVEMPFD 338
+H+++N K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 339 KTKNQRKGFCFITF 380
KT ++KG+ F+ F
Sbjct: 127 KTSGRQKGYAFVEF 140
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 1e-05
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 392
I++G L ++++D+I FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 39.5 bits (88), Expect = 4e-04
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 155
++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 34 YIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +3
Query: 6 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 185
VG LS++ T+ +L D FG + SI + DP T RSRGF ++ F+ +++ +A
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 186 TINNKKVDPKKAKAR 230
+ + V A+ R
Sbjct: 156 DLMGRPVRITVAEPR 170
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/75 (22%), Positives = 39/75 (52%)
Frame = +3
Query: 246 VGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 425
VG LS +++++++ +FF E + + + D + +GF ++ FE+ ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 426 TIGGKEVDVKRATPK 470
+ G+ V + A P+
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 143
F+ LS++T + ++ F YG IE I V + TG+S G+AF+VF+
Sbjct: 103 FLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Frame = +3
Query: 159 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGELSSEISDDEIRNFFSEFGTILEVEM 329
D+V E T +KK P+ ++ +FV ++S + +DE++ FS+FGT+ V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 330 PFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRA 461
+ +GF F++F + E+ + + + G+ ++V++A
Sbjct: 133 MREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 152
FV G++ + EL+ F +G + + + +P T SRGF F+ F E
Sbjct: 104 FVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 43.2 bits (97), Expect = 3e-05
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 20/148 (13%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA-AG 179
FV L+ T +EL D F G + + D +GRS+G A++ F +S+ +A +G
Sbjct: 243 FVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSG 302
Query: 180 EHTINNKKV-----DPKKAKARHG--------------KIFVGELSSEISDDEIRNFFSE 302
+ + + K KAR ++ V + ++D++++ F
Sbjct: 303 KRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEP 362
Query: 303 FGTILEVEMPFDKTKNQRKGFCFITFES 386
FG I V + D +N+ KGF +I + +
Sbjct: 363 FGDIEFVHLQRD-DQNRSKGFGYIQYRN 389
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-T 416
+FV +L++ ++ E+ +FF + G + + ++ DK + KG ++ F E V + +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 417 PKRTIG 434
KR +G
Sbjct: 302 GKRLLG 307
Score = 35.1 bits (77), Expect = 0.008
Identities = 15/50 (30%), Positives = 32/50 (64%)
Frame = +3
Query: 6 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 155
V + + TD++++ F +G+IE ++++ D + RS+GF +I ++ P S
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 43.2 bits (97), Expect = 3e-05
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +3
Query: 6 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 140
V LS +T ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 213 KKAKARHGKIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 380
K+ + + V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 42.3 bits (95), Expect = 5e-05
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 182
FV L+++T +L + F G I+ V T+P TG +RG+ F+ F E D AA E
Sbjct: 8 FVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAKE 65
Query: 183 HTINNKKV 206
+ NKK+
Sbjct: 66 --LKNKKL 71
Score = 39.1 bits (87), Expect = 5e-04
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 143
FV L +E T++EL +HF +G + + DP T RS G FI F+
Sbjct: 280 FVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 419
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF + K
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 420 K-RTIGGKEVDVKRATPK 470
K + + G+ + + ATP+
Sbjct: 67 KNKKLHGRILRLDFATPR 84
Score = 31.5 bits (68), Expect = 0.10
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +3
Query: 153 SIDKVMAAGEHTINNKKVDP--KKAKARHGKIFVGELSSEISDDEIRNFFSEFGTILEVE 326
++D V +G+ + + ++ + + +FV L E ++ E+ N F +FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 327 MPFDKTKNQRKGFCFITFESEQVVNDLLK 413
+ D ++ G FI F E+ + L+
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 41.9 bits (94), Expect = 7e-05
Identities = 18/74 (24%), Positives = 39/74 (52%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 182
FVG + ++ +++++ + F G +++ + DP TG +G+ F F E+ A
Sbjct: 10 FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET----TAMAV 65
Query: 183 HTINNKKVDPKKAK 224
+NN ++ P+K +
Sbjct: 66 RKLNNSELGPRKIR 79
Score = 34.3 bits (75), Expect = 0.014
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT-FESEQVVNDLLKT 416
+FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 417 PKRTIGGKEVDVK 455
+G +++ V+
Sbjct: 69 NNSELGPRKIRVE 81
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 41.9 bits (94), Expect = 7e-05
Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 15/171 (8%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 182
++G L T+ ++ + G+ + + + TG + G+ F+ F +P M+
Sbjct: 96 WMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNN 155
Query: 183 HTINNKKV-------------DPKKAKARHGKIFVGELSSEISDDEIRNFF-SEFGTILE 320
I + +KA IFVG+LS +++ ++ + F S + +
Sbjct: 156 KPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKS 215
Query: 321 VEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTI-GGKEVDVKRATPK 470
++ D N +G+ F+ F E L + I G + + V ATPK
Sbjct: 216 AKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +3
Query: 210 PKKAKARHGKIFVGELSSEISDDEIRNFFSEFGTILEVEMP 332
P+ A + +FVG LS +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 31.1 bits (67), Expect = 0.13
Identities = 13/66 (19%), Positives = 33/66 (50%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 419
+++GEL +++ I+ ++ G ++V++ ++ G+CF+ F S + +
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMN 154
Query: 420 KRTIGG 437
+ I G
Sbjct: 155 NKPIPG 160
Score = 28.3 bits (60), Expect = 0.95
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 110
FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 306 FVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.5 bits (93), Expect = 1e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +3
Query: 153 SIDKVMAAGEHTINNKKVDPKKAKA--RHGKIFVGELSSEISDDEIRNFFSEFGTILEVE 326
SI ++ A + I K D + A + ++VG LS ++++I FS+ G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 327 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT 428
M D+ GFCF+ + Q D LK RT
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSLKYISRT 96
Score = 33.1 bits (72), Expect = 0.033
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI-VFKAPESIDKVMAAG 179
+VG LS+ TT++++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 35 YVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYIS 94
Query: 180 EHTINNKKVDPKKAKARHG 236
+++ + + +A HG
Sbjct: 95 RTSLDERII---RADLDHG 110
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 41.1 bits (92), Expect = 1e-04
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 158
FV +S T ++LR HF ++GE+ +++K +P TG S G I F SI
Sbjct: 97 FVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSI 148
Score = 34.3 bits (75), Expect = 0.014
Identities = 11/55 (20%), Positives = 29/55 (52%)
Frame = +3
Query: 237 KIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 401
++FV +S ++ +++R F FG + ++++ + G C I+F+ ++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 167
+VG L W T+D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 283 YVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.3 bits (90), Expect = 2e-04
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGE-IESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAA 176
FVG L ++ L D F A G+ +++ V D N GRS+G+ F+ + + E+ D + A
Sbjct: 102 FVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEAM 160
Query: 177 GEHTINNKKVDPKKAKARHGKIFVGELSSEISDDEI 284
+ NK + A R GK GE +I++ ++
Sbjct: 161 NNQFLMNKPITVSYAFKREGK---GERHGDIAERKL 193
Score = 33.5 bits (73), Expect = 0.025
Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV-MAAG 179
++G L + TD L + G + +I++ D GF F F + ++
Sbjct: 14 YLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILN 73
Query: 180 EHTINNKKVDPKKAKARHG-------KIFVGELSSEISDDEIRNFFSEFGTILEVEMPFD 338
+ + K + +A G +FVG L + + + + FS G +++
Sbjct: 74 QVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVAR 133
Query: 339 KTKNQRKGFCFITFES 386
+ KG+ F++++S
Sbjct: 134 DENGRSKGYGFVSYDS 149
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKT 416
I V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 417 PKRTIGGKE--VDVKR 458
+ G+E V +KR
Sbjct: 161 NNAELDGEELFVSIKR 176
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Frame = +3
Query: 189 INNKKVD-PKKAKARHGKIFVGELSSEISDDEIRNFFSEFGTI-------------LEVE 326
+NN K+ P + + I+VG + S +SD+EI FS++G + E
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKA 60
Query: 327 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVK 455
PF KN + + F+ F + + + ++LK K T+G +++ +K
Sbjct: 61 KPFKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLGQRKLTIK 103
Score = 34.3 bits (75), Expect = 0.014
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 27 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 206
T +L D F +G I S + PN+G S+G+ F+ F+ E+ + T+N V
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMV 450
Query: 207 DPKK 218
K+
Sbjct: 451 GKKR 454
Score = 31.1 bits (67), Expect = 0.13
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESI----------NVKTDPNTGRSRG--FAFIVFKA 146
+VG + +D+E+ HF YG++ESI K P G + F+ F
Sbjct: 20 YVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFVN 79
Query: 147 PESIDKVMA-AGEHTINNKKVDPKKAKARHGKI 242
ESI++V+ A T+ +K+ K K+
Sbjct: 80 AESIEEVLKDAKGMTLGQRKLTIKARVVNPAKL 112
Score = 25.0 bits (52), Expect = 8.8
Identities = 24/91 (26%), Positives = 37/91 (40%)
Frame = +3
Query: 186 TINNKKVDPKKAKARHGKIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 365
+I N +DP ++ V S++ D FS FG+IL + KG+
Sbjct: 373 SIPNSPIDPSNLYVKNLDDTVITCKSQLED-----LFSPFGSILSSMLACYPNSGISKGY 427
Query: 366 CFITFESEQVVNDLLKTPKRTIGGKEVDVKR 458
F+ F Q+ + K T+ G V KR
Sbjct: 428 GFVAF--RQI--EAAVRAKDTLNGMMVGKKR 454
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 164
FV L+ T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 247 FVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Score = 33.5 bits (73), Expect = 0.025
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 398
+FV +L+ D+++ FS FG I+ ++ DK + FI F++++ V
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESV 298
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.9 bits (79), Expect = 0.005
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 149
+VG + +E ++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 8 YVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 31.1 bits (67), Expect = 0.13
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 380
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 35.9 bits (79), Expect = 0.005
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEMPFDK 341
+FVG L+S +S+ +++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 35.5 bits (78), Expect = 0.006
Identities = 15/76 (19%), Positives = 39/76 (51%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 182
+V + ++ +K++ F YG++ES+ + N + +GF ++V + + ++A
Sbjct: 760 YVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENALSAAG 817
Query: 183 HTINNKKVDPKKAKAR 230
+ N+ ++ +K R
Sbjct: 818 KQLGNRVLNVVLSKPR 833
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.014
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 237 KIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 386
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-- 176
++ L + ++ + +G++ S + + G S+GF F FK P + ++
Sbjct: 313 YISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLD 372
Query: 177 GEHTINNK 200
G+ T NK
Sbjct: 373 GKDTYGNK 380
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 33.5 bits (73), Expect = 0.025
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 246 VGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 425
V L ++ + ++ + F F I V M +D+ + +G C + FE+ Q D KT +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 426 T-IGGKEVDVKRATP 467
T + G E+ + + +P
Sbjct: 147 TNLKGSEIQISKKSP 161
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.7 bits (71), Expect = 0.044
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +3
Query: 237 KIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTK-NQRKGFCFITFESEQVVNDLLK 413
+I+VG LSS I ++ + FS FG++ +E+ T + F ++ F +++ K
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 414 T--PKRTIGGKEVDVKRATP 467
+ T G ++ ++ A P
Sbjct: 66 SYLSNATFKGSKLRIEEARP 85
Score = 30.3 bits (65), Expect = 0.23
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINV--KTDPNTGRSRGFAFIVFKAPE 152
+VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 8 YVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.9 bits (69), Expect = 0.077
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 36 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDP 212
++L + F +G I+S + + P+T S+G+ F+ F P E++ + K++
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 213 KKAKARHGK 239
A+ R +
Sbjct: 495 NYAEKREDR 503
Score = 27.9 bits (59), Expect = 1.3
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +3
Query: 168 MAAGEHTINNKKVDPKKAKARHGKIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTK 347
M A E K KK + I+VG L S ++ F FG + M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 348 NQRKG------FCFITFESE 389
N+ F FITFE++
Sbjct: 57 NKSTDSKSPTLFAFITFENK 76
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +3
Query: 240 IFVGELSSEI--SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT----FESEQVVN 401
+FV L I + ++ FS+FG I + + KG+ F++ FE+ Q +N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 402 DL 407
L
Sbjct: 481 TL 482
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 31.1 bits (67), Expect = 0.13
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 270 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 449
+++ IR+FFS+FG + +VE+ N C + F S + N+ +P+ + +
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIK 308
Query: 450 V 452
+
Sbjct: 309 I 309
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 31.1 bits (67), Expect = 0.13
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = +3
Query: 192 NNKKVDPKKAKARHGKIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 371
+NKK + ++ +R +++ L SD+ + + + FG + + D N KG+ F
Sbjct: 283 DNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 372 ITFESEQ 392
FE E+
Sbjct: 342 ACFEEEK 348
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 30.3 bits (65), Expect = 0.23
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 258 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 386
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.9 bits (64), Expect = 0.31
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 104
F+G L +KE+ + FG +G+IE I + + N
Sbjct: 302 FIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEM 329
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 29.5 bits (63), Expect = 0.41
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 213 KKAKARHGKIF-VGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 380
+ AK+ G I V + E +++++ + F++FG + + + D+ KG+ I +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.72
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 6 VGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAP 149
V L + T+ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 59 VSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEM 329
+F+G L + I++DEIR FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 104
F+G L T+ E+R+ +G I+ I + T+ N
Sbjct: 209 FLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +3
Query: 240 IFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 419
++V +L I+ E+R++F FG IL ++ N + + +EQ +N++ P
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV----NNNSGRIVFAQRYFAEQAINEMNNFP 233
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 210 PKKAKARHGKIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 350
P++ + +GK L+S ++E+RN FSEF LE E+ F+ ++
Sbjct: 946 PEEIRKLNGKKI---LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 117 RGFAFIVFKAPESIDKVMAAGEHTINNKK 203
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 27.1 bits (57), Expect = 2.2
Identities = 22/79 (27%), Positives = 39/79 (49%)
Frame = +3
Query: 3 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 182
F+ G+ E D ++R HF YG ++S+ + R++ AF+ FK S + +AA
Sbjct: 215 FLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTRSSAE--IAAAA 266
Query: 183 HTINNKKVDPKKAKARHGK 239
N ++ + K + GK
Sbjct: 267 SPDGNVVIEGFRLKVQWGK 285
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +3
Query: 237 KIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 410
++FVG + + + +++ +FF +G IL+ ++ GF F+ E + D++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARDIV 54
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 224 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 63
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/54 (22%), Positives = 25/54 (46%)
Frame = +3
Query: 204 VDPKKAKARHGKIFVGELSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 365
+ P K +F+G ++ + + +R+ F FG++ + + N R GF
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL----NHNYRHGF 445
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +3
Query: 318 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP-----KRTIGGKEVDVKRAT 464
+ E+P D ++ R +S+ N +LKTP K+T+ K++ AT
Sbjct: 43 DAELPQDAKEDLRPTETLTPLKSKAAQNGILKTPGTLQIKKTVNFKDISKDAAT 96
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 8.8
Identities = 27/95 (28%), Positives = 43/95 (45%)
Frame = -3
Query: 440 LSTNCSFGSLKQIIYNLLRFKCDETEALSLVLCFVKGHLHF*DSSKFTEEVSDFII*DFT 261
+STN F S + IYNLL F +E+ F+ G + +S +F + I F
Sbjct: 497 ISTNSWFASYDKGIYNLL-FGMASSES------FINGQIAEKNSFQFPCSILPSYIDLFI 549
Query: 260 AELSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY 156
+ +S KNL F + V + + + H LV+
Sbjct: 550 SLMSFKNLNFKLFDYNLAHH-VKESMERAFHQLVF 583
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 8.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -3
Query: 239 LPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTL 75
L M C +++ F +F S ++V +GLK++ SA V I + NTL
Sbjct: 1198 LAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTNTL 1252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,002
Number of Sequences: 5004
Number of extensions: 41722
Number of successful extensions: 239
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -