Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0923
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 83 4e-17
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 50 3e-07
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 46 7e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 3e-05
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 28 1.2
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 28 1.6
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.1
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 27 3.6
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 26 4.8
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 4.8
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 8.4
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 83.0 bits (196), Expect = 4e-17
Identities = 41/99 (41%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +1
Query: 112 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKLLQVQPTGHFARDCKEE 288
S P + CYKC R GH AR+C G S G +R GH ARDC
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 289 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 405
+CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 135 V-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 81.8 bits (193), Expect = 9e-17
Identities = 32/74 (43%), Positives = 41/74 (55%)
Frame = +1
Query: 259 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 438
GH AR+C + CY CN TGH A EC + E +CY C GH+ R+CP
Sbjct: 26 GHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAE 84
Query: 439 CYNCXKSGHISRNC 480
CY C + GHI+R+C
Sbjct: 85 CYKCGRVGHIARDC 98
Score = 75.4 bits (177), Expect = 8e-15
Identities = 49/143 (34%), Positives = 63/143 (44%), Gaps = 28/143 (19%)
Frame = +1
Query: 136 SVCYKCNRTGHFARECTQ------------GGVVSRD---SGFNRQREKLLQVQPTGHFA 270
S+CY CN+TGH A ECT+ G + RD S RQ + + GH A
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIA 95
Query: 271 RDCKEEADR-------------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 411
RDC+ + CY C GH AR+C CY+C K GH + C +
Sbjct: 96 RDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG---VKCYSCGKIGHRSFECQQ 152
Query: 412 GGRESATQTCYNCXKSGHISRNC 480
S Q CY C + GHI+ NC
Sbjct: 153 A---SDGQLCYKCNQPGHIAVNC 172
Score = 70.9 bits (166), Expect = 2e-13
Identities = 31/63 (49%), Positives = 38/63 (60%)
Frame = +1
Query: 295 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCXKSGHISR 474
RCY C GH AREC + CYNCN+TGH A C E +E +TCY C +GH+ R
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTEPQQE---KTCYACGTAGHLVR 71
Query: 475 NCP 483
+CP
Sbjct: 72 DCP 74
Score = 52.4 bits (120), Expect = 6e-08
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 358 PSCYNCNKTGHIARNCPEGGRESATQTCYNCXKSGHISRNC--PDGTKTCY 504
P CYNC + GH AR C +G CYNC ++GH + C P KTCY
Sbjct: 17 PRCYNCGENGHQARECTKG------SICYNCNQTGHKASECTEPQQEKTCY 61
Score = 31.9 bits (69), Expect = 0.097
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 124 AMSSSVCYKCNRTGHFARECT 186
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 50.4 bits (115), Expect = 3e-07
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 298 CYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRESATQTCYNCXKSGHISR 474
C+ C GHI ++C ++ D S C+ C H C + G + C+ C ++GH+S
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAK-CFICHENGHLSG 137
Query: 475 NCPDGTKTCY 504
C K Y
Sbjct: 138 QCEQNPKGLY 147
Score = 46.0 bits (104), Expect = 6e-06
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Frame = +1
Query: 223 RQREKL-LQVQPTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 384
R R+K + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 385 GHIARNCPEG--GRESATQTCYNCXKSGHISRNCPDGTK 495
GH++ C + G C C H++++C K
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 35.9 bits (79), Expect = 0.006
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQG-GVVSRDSGFNRQREKLLQVQPTGHFARDCKEEADRCYRCNGT 318
C+ C + GH ++C + VS + L G + +C+ C+
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPL------KFAKCFICHEN 132
Query: 319 GHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 432
GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
Score = 34.3 bits (75), Expect = 0.018
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 331 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCXKSGHISRNC 480
R Q + C+ C + GHI ++CPE + C+ C H C
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNAC 115
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/70 (21%), Positives = 28/70 (40%)
Frame = +1
Query: 136 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKLLQVQPTGHFARDCKEEADRCYRCNG 315
S+C++C H C++ G + F L Q + + + C C+
Sbjct: 100 SICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQN-PKGLYPKGGCCKFCSS 158
Query: 316 TGHIARECAQ 345
H+A++C Q
Sbjct: 159 VHHLAKDCDQ 168
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 45.6 bits (103), Expect = 7e-06
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Frame = +1
Query: 262 HFARDCKEEADRCYRCNGTGHIAREC----------------AQSPDEPSCYNCNKTGHI 393
+F D E+ C+ C G GHI+++C + P C NC GHI
Sbjct: 78 YFGSD-PSESIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHI 136
Query: 394 ARNCPEGGRESATQTCYNCXKSGHISRNCP 483
A C E R+ + C C H S CP
Sbjct: 137 AARCSE-PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 33.1 bits (72), Expect = 0.042
Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 15/139 (10%)
Frame = +1
Query: 133 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKLLQVQPTGHFARDCKEEADRCYRCN 312
S VC+ C GH +++C V+ G H + C +C C
Sbjct: 86 SIVCHNCKGNGHISKDCPH--VLCTTCG-----------AIDDHISVRCPW-TKKCMNCG 131
Query: 313 GTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGR-------------ESATQTCYN 447
GHIA C++ C C+ H + CP R + CYN
Sbjct: 132 LLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYN 191
Query: 448 CXKSGHISRNCPDGTKTCY 504
C H +C +++ Y
Sbjct: 192 CASDEHFGDDCTLPSRSNY 210
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 43.6 bits (98), Expect = 3e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 364 CYNCNKTGHIARNCPEGGRESATQTCYNCXKSGHISRNCP 483
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 29.9 bits (64), Expect(2) = 0.099
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Frame = +1
Query: 259 GHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 360
GH DC E + C C GHIAR+C +P
Sbjct: 318 GHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 418 RESATQTCYNCXKSGHISRNCPD 486
R+ Q C NC GH +CP+
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPE 326
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Frame = +1
Query: 139 VCYKCNRTGHFAREC--TQGGVVSRDSGFNRQREKLLQVQPTGHFARDCKEEADRCYRCN 312
VC C GH AR+C DS +R+ + L+Q G + E + +
Sbjct: 335 VCRHCGSIGHIARDCPVRDQQPPMADSTADREYQSLMQELGGGSAISNGNGEPQKSIEFS 394
Query: 313 GTGHIARECAQSP 351
+G + + P
Sbjct: 395 ESGAASPQAGHPP 407
Score = 20.6 bits (41), Expect(2) = 0.099
Identities = 6/19 (31%), Positives = 9/19 (47%)
Frame = +1
Query: 133 SSVCYKCNRTGHFARECTQ 189
+ VC C GH +C +
Sbjct: 308 NQVCQNCGNVGHRRFDCPE 326
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = +1
Query: 400 NCPEGGRESATQTCYN----CXKSGHISRNCP 483
+CP+G E T C+N C +G+IS P
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIP 97
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +1
Query: 415 GRESATQTCYNCXKSGHISRN--CP 483
GR+ T+ C NC + GH+ N CP
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTNKICP 963
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 343 QSPDEPSCYNCNKTGHIARN--CPEGGR 420
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 136 SVCYKCNRTGHFAREC 183
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +1
Query: 262 HFARDCKEEADRCYRCNGTGHIAREC 339
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 136 SVCYKCNRTGHFAREC 183
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +1
Query: 262 HFARDCKEEADRCYRCNGTGHIAREC 339
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +3
Query: 234 EVASSATHRTLCEGLQGRG*PLLQM*RHWAHSARVRTEPGRAVMLQLQQDGPHRTELSRG 413
EV AT TLC QGRG + +A + G+ V L+ GPH S+
Sbjct: 136 EVKLRATRNTLCPRCQGRG------GKRFAKEKPCLSCDGKGVKQHLKHVGPHHVTNSQV 189
Query: 414 GAGVCD 431
C+
Sbjct: 190 ICDTCN 195
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 161 PGISRANARRGAWCRGIPVSIGNVRSCFKCNPQDTLRGIARK 286
PGI N RR C+ I +R C KC D ++G+ +K
Sbjct: 129 PGID--NLRRSQICKRINDHCKKMRRCSKC---DAMQGVVKK 165
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +1
Query: 331 RECAQSPDEPS-----CYNCNKTGHIARNCP 408
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 25.4 bits (53), Expect = 8.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +1
Query: 139 VCYKCNRTGHFAREC 183
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 448 SYSRSASQTPAPPRDSSVRCGPSCCSCN 365
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,753
Number of Sequences: 5004
Number of extensions: 46922
Number of successful extensions: 198
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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