Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0922
         (810 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   2.9  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   6.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   6.6  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
 Frame = -3

Query: 598 EIAFWCIESKNVSLVSIRA*RSKDWNFFIATV----PQTPSSEYCRVWR 464
           EIAF       +  +      +K W     TV    P+   SEYCRV++
Sbjct: 238 EIAFAYKYGDPIPYIQYTETETKTWGSVFNTVLELMPKHACSEYCRVFK 286


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 166 IRSRLIFD-ILDIGREDSYFEVSRASDEQNVIGMPINRCHSRTNGLLNMLR 17
           ++  LIF  +L + R+ SY +   A  E+ +  + +++C +   G+L  ++
Sbjct: 169 VKEHLIFQALLRMDRDISYSQ-RMARVEEVISDLALSKCQNTPIGILGRIK 218


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 166 IRSRLIFD-ILDIGREDSYFEVSRASDEQNVIGMPINRCHSRTNGLLNMLR 17
           ++  LIF  +L + R+ SY +   A  E+ +  + +++C +   G+L  ++
Sbjct: 169 VKEHLIFQALLRMDRDISYSQ-RMARVEEVISDLALSKCQNTPIGILGRIK 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,994
Number of Sequences: 336
Number of extensions: 3875
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)