Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0922
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 118 1e-27
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 34 0.021
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 29 1.0
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 28 1.4
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 28 1.4
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 28 1.4
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 28 1.8
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 2.4
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 27 3.2
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 27 3.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 4.2
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 5.5
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 26 5.5
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 7.3
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 25 9.6
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 9.6
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 9.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.6
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 9.6
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 9.6
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 25 9.6
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 118 bits (283), Expect = 1e-27
Identities = 47/83 (56%), Positives = 65/83 (78%)
Frame = +2
Query: 2 NNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSK 181
N+WWVSKH+K+P+RST+ S+DWHPNN+LL AG AD K V SAY++D++ +P +VWGS+
Sbjct: 133 NDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSR 192
Query: 182 LPLGQLLAEFPNSPSGGGWVHSV 250
LP + AE+P+ GGWVH+V
Sbjct: 193 LPFNTVCAEYPS----GGWVHAV 211
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +3
Query: 486 EEGVWGTVAMKK-FQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGLD 662
EEG A++ F+++D ++ + L ++HQN I+ + Y GT + F++SG D
Sbjct: 311 EEGPVSFTALRSTFRNMDLKGSSQSISS-LPTVHQNMIATLRPYAGTPGNITAFTSSGTD 369
Query: 663 GQLVIWDL 686
G++V+W L
Sbjct: 370 GRVVLWTL 377
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 256 SADGNKVAWVAHDSSINVTDATKG----RAVIKLKTEYLXFLGCSWITNNSLIVAGHSCI 423
S GN +A+ HDSS+ + + RA+I +K L W ++++ AG++
Sbjct: 214 SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS 273
Query: 424 PLL 432
P+L
Sbjct: 274 PIL 276
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 34.3 bits (75), Expect = 0.021
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 256 SADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLXFLGCSWITNNSLIVA 408
S DG +A + DSS+ + D G+ + L+ C+W T++ L+V+
Sbjct: 398 SPDGRCIATASFDSSVRLWDGKTGKFLATLRGHVAAVYQCAWSTDSRLLVS 448
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 50 VTSIDWHPNNILLVAGSADFKVRVFS 127
V ++DW P+ + +G AD VR++S
Sbjct: 476 VFAVDWSPDGQRVASGGADKAVRIWS 501
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 50 VTSIDWHPNNILLVAGSADFKVR 118
V ++DWHP+ LL +GS D V+
Sbjct: 209 VKTVDWHPSKGLLASGSKDNLVK 231
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 50 VTSIDWHPNNILLVAGSADFKVRVFS 127
V+SID++P LLV+GS D VR+++
Sbjct: 141 VSSIDFNPLGTLLVSGSWDETVRIWN 166
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 50 VTSIDWHPNNILLVAGSADFKVRVF 124
V S+DWHP ++++ SAD + V+
Sbjct: 271 VMSVDWHPTKEMILSSSADSSMIVW 295
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 161 PNVWGSKLPLGQLLAEFPNSPSGGGWVHSVSSLRTEIKLP 280
PN G + + A+FPNS +GG +S S+ T + +P
Sbjct: 757 PNTQGINTEIKDMAAQFPNSQTGGLTPNS-WSMNTNVSVP 795
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 564 TFLDSIHQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDLDT 692
T D H + +SC+ + T F ++G D + +WDL+T
Sbjct: 141 TITDGGHSDWVSCVRFSPNPDNLT--FVSAGWDKAVKVWDLET 181
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/26 (42%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = -3
Query: 715 DSFNDLSKVSKS-HMTSWPSRPEVLN 641
DS NDLS++SK+ +++SW + E+++
Sbjct: 42 DSLNDLSEISKNLYISSWKTASELVS 67
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 29 KKPIRSTVTSIDWHPNNILLVAGSADFKVRVF 124
K P +V + WHPN +L G D +V+
Sbjct: 296 KLPHSDSVLTGSWHPNGNILATGGQDTTAKVW 327
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +2
Query: 8 WWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAY 133
+W K + + + S + + W ++ L+AG+ D +R++ A+
Sbjct: 117 YWKVKIVCRSMGSEIYDLCWSVDSNFLIAGAMDNSLRLYDAH 158
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 624 KSHTNKFSTSGLDGQLVIWDLDT 692
K+ NKF+T G D ++ IW L T
Sbjct: 28 KNSLNKFATCGGDSKIRIWQLIT 50
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 4.2
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = -1
Query: 282 PGNFISVRREETLWTQPPPEGELGNSANSCPKGNLEPHTFGPG*SSISLI*AEKTRTLKS 103
P F SV + T P L S++S T P SSIS + + L S
Sbjct: 570 PSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSP--SSISSSISSSSTILSS 627
Query: 102 AEPATSKMLLGCQSI 58
P+TS +++ SI
Sbjct: 628 PTPSTSSLMISSSSI 642
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 50 VTSIDWHPNNILLVAGSADFKVRVFS 127
V I +HP L V+G D+KV V++
Sbjct: 56 VRGIAFHPTQPLFVSGGDDYKVNVWN 81
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 382 ITNNSLIVAGHSCI--PLLYCHDGDDIKYV 465
+ N L+ A S + P+LYCHD D +Y+
Sbjct: 216 LITNELLRAIESLLRRPMLYCHDPADYQYL 245
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 26 IKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFS 127
+K I + VT+I PN+ + GS D +RV+S
Sbjct: 438 LKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWS 471
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 50 VTSIDWHPNNILLVAGSAD 106
V + WHP LLV+GS D
Sbjct: 426 VKVVTWHPTEDLLVSGSYD 444
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 9.6
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 77 YWDANQ*MSQSNEWA 33
+WDAN +SQ N+W+
Sbjct: 135 HWDANVTLSQENKWS 149
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 650 STELVSVRFSSFVNIDARDSVLVYRVQECIAGLDTSMTI 534
STE S +F DSVL+Y + + I GL+T++ I
Sbjct: 45 STEF-SNALHTFGRFSDNDSVLIYDLCKSIIGLETNLGI 82
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 50 VTSIDWHPNNILLVAGSAD 106
V SI WHPNN +A + D
Sbjct: 216 VNSIAWHPNNATRLATAID 234
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 169 HIRSRLIFDILDIGREDSYFEVSRASDEQNVIGMP 65
H++ RLIFD++ + + V++A+ V+G P
Sbjct: 649 HLQERLIFDLMALPNQAWENIVAQAAQNAQVLGDP 683
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Frame = +2
Query: 41 RSTVTSIDWHPN--NILLVAGSADFKVRVFSAYIK-DIEDQ 154
R+ + SI+WHPN +++ V G AD ++ ++ ++ D E+Q
Sbjct: 387 RAPIYSIEWHPNEDSVIGVVG-ADNQISLWDLSVELDEEEQ 426
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 71 PNNILLVAGSADFKVRVFSAYIKDIED 151
P +LLVAG D +V Y+K++++
Sbjct: 260 PEYLLLVAGGYDIRVSENRRYLKELQE 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,276,565
Number of Sequences: 5004
Number of extensions: 66877
Number of successful extensions: 253
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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