Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0922
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1227 - 35076047-35076217,35076737-35076797,35077038-350771... 67 1e-11
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533... 36 0.038
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 35 0.067
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282... 32 0.62
11_01_0067 + 539152-540063 31 1.1
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 31 1.4
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 30 1.9
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 30 2.5
02_04_0453 + 23053621-23054167,23054867-23054958,23055085-230551... 29 3.3
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 29 4.4
03_03_0068 - 14246747-14248069 29 5.8
01_06_1314 + 36215607-36215734,36215911-36216043,36216135-362162... 29 5.8
11_01_0488 + 3770410-3770774,3771197-3771284,3771383-3771466,377... 28 7.6
06_03_0390 - 20280355-20281178,20281392-20281565,20281613-20281847 28 7.6
>02_05_1227 -
35076047-35076217,35076737-35076797,35077038-35077123,
35077213-35077301,35077685-35077766,35078094-35078136,
35078211-35078284,35078492-35078561,35078747-35078816,
35079275-35079369,35079473-35079549,35080725-35080760
Length = 317
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/69 (42%), Positives = 42/69 (60%)
Frame = +2
Query: 2 NNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSK 181
NNWW+SK ++K S+VTS+ WHPNNILL S D K RV S +IK ++ + +
Sbjct: 91 NNWWISKVVRKKHESSVTSVAWHPNNILLATTSTDGKCRVLSTFIKGVDTRGSHASTSTD 150
Query: 182 LPLGQLLAE 208
G+ +A+
Sbjct: 151 WKFGEQIAQ 159
>05_03_0376 -
13252220-13252354,13252433-13252541,13253279-13253337,
13253608-13253700,13254078-13254153,13254405-13254467,
13254535-13254629,13254743-13254845,13254930-13255024,
13255098-13255156,13255445-13255656,13256090-13256222,
13256691-13257081
Length = 540
Score = 35.9 bits (79), Expect = 0.038
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 44 STVTSIDWHPNNILLVAGSADFKVRVFS 127
+++TS+DWHP + + GSAD VRV S
Sbjct: 511 ASITSVDWHPTLPMYITGSADNSVRVTS 538
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 35.1 bits (77), Expect = 0.067
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 50 VTSIDWHPNNILLVAGSADFKVRVFSA 130
V S+DWHP LLV+G D+ V+++ A
Sbjct: 271 VKSVDWHPTKSLLVSGGKDYLVKLWDA 297
>03_01_0363 +
2827990-2828055,2828215-2829306,2829715-2829837,
2829994-2830110,2830248-2830429,2830558-2830744,
2830846-2831055,2831177-2831305,2832179-2832247,
2832751-2832873,2832957-2833007,2833101-2833250
Length = 832
Score = 31.9 bits (69), Expect = 0.62
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +2
Query: 41 RSTVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQL 199
RS + SID P+ LV+GSAD ++RVF+ K E+ + W G++
Sbjct: 62 RSEIWSIDVDPSERFLVSGSADQELRVFTVR-KSAEEGEDWSKWDMLKLFGEI 113
>11_01_0067 + 539152-540063
Length = 303
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -1
Query: 597 R*RSGVSSPRMYRWSRYEH-DDPRTGTSS*QQSPRLLPL 484
R R GV PR RW DP T + Q SP L PL
Sbjct: 150 RRRQGVEGPRRRRWRGLRRGSDPATAMLAAQDSPHLAPL 188
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 50 VTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWG 175
+ ID+HP LL GSAD V+ + ++ GP G
Sbjct: 285 IRCIDFHPQEFLLATGSADRTVKFWDLETFELIGSAGPEATG 326
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 579 IHQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDLDT 692
+ QN +SC + T +N ++ GL G++ IWDLD+
Sbjct: 93 VGQNLVSCSS---DTTLKSNIVASGGLGGEVFIWDLDS 127
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 50 VTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWG 175
+ ID+HP+ LL GS+D V+ + ++ GP G
Sbjct: 210 IQCIDFHPHEFLLATGSSDKTVKFWDLETFELIGSTGPETTG 251
>02_04_0453 +
23053621-23054167,23054867-23054958,23055085-23055149,
23058558-23059086
Length = 410
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 274 VAWVAHDSSINVTDATKGRAVIKLKTEYLXFLGCSWITNNSLIVAGHSCIP 426
V W+AH S +T R + +E++ +G S+ + V +CIP
Sbjct: 140 VGWLAHPHSRTITAGMARRPPLAPLSEWILLVGNSFRGSGKYCVCSSTCIP 190
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 50 VTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGP 163
+ +D+HP+ LL GSAD V+ + ++ GP
Sbjct: 193 INCLDFHPHEFLLATGSADKTVKFWDLETFELIGSSGP 230
>03_03_0068 - 14246747-14248069
Length = 440
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 419 AFRYCTATTVTILSMSPNSTILRGRSLGDCCYEEVPVLGSSCS 547
A R CTAT ++ +T RGRS C + LG CS
Sbjct: 60 AARSCTATVTAAATVETRTTAPRGRSCTTVCVRQ---LGRKCS 99
>01_06_1314 +
36215607-36215734,36215911-36216043,36216135-36216281,
36217172-36217348,36217469-36217717,36217917-36217964,
36218364-36218419,36218639-36218720,36219260-36219515,
36219563-36219629,36219688-36219724,36219918-36220030,
36220838-36220988,36221352-36221538,36221768-36221841
Length = 634
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -1
Query: 204 ANSCPKGNLEPHTFG-PG*SSISLI*AEKTRTLKSAEPATSKMLLGCQSIDVTV 46
AN K +L G PG SL+ + T A SK++ CQS DV V
Sbjct: 8 ANLAGKQSLRVVVIGDPGTGKSSLVVSAATEATSPAPEQRSKLIAECQSADVVV 61
>11_01_0488 +
3770410-3770774,3771197-3771284,3771383-3771466,
3772128-3772224,3772324-3772411,3772800-3772848,
3773044-3773238,3773713-3774159
Length = 470
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 256 SADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLXFLGCSWIT 387
S DG +A + D + V D K + + K+ + L CSW T
Sbjct: 199 SPDGTYLATIGRDGYLRVFDFAKEQLIFGGKSYFGALLCCSWRT 242
>06_03_0390 - 20280355-20281178,20281392-20281565,20281613-20281847
Length = 410
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 202 SRVSQFAFRWRLGPQRFLSADGNKVAWVAHDSSINVTDATK 324
+R S A+ W L +R SA+ K +AHD +NV D K
Sbjct: 5 TRPSSSAYSW-LTTKRKNSAEPKKRTKIAHDKKLNVADWRK 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,424,412
Number of Sequences: 37544
Number of extensions: 445723
Number of successful extensions: 1263
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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