Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0922
         (810 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    26   1.2  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   4.8  
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    24   6.4  

>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -2

Query: 341 FMTALPLVASVTLIELSWATQATLFPSAERKRCGPNRHLKANWETLLTVVLK 186
           FM+ L +  ++ L+ + +A  A + PS   + CGP R L + W+  +   +K
Sbjct: 501 FMSTLLISFTLALVPVVYAL-AEIVPS---RSCGPFRGLPSVWDRAIAAFMK 548


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 588 NAISCINIYKGTKSHTNKFSTSGLD 662
           N   C+  +KG ++ TN+F  S  D
Sbjct: 155 NKADCLPTFKGNRADTNRFPPSRPD 179


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +3

Query: 489 EGVWGTVAMKKFQSLDRHARIETSDTFLDSIHQ 587
           +G+W  V  +K +  D       S  +  S+HQ
Sbjct: 188 DGIWREVTRRKSRRSDNRRNERESTQYQQSVHQ 220


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 825,677
Number of Sequences: 2352
Number of extensions: 16457
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85655418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)