Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0921
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    27   3.2  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    26   5.7  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   9.9  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   9.9  

>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 314 LFPCSVTAGEDCSSLRASGFY 376
           LF C +T G+D ++LRAS  +
Sbjct: 278 LFDCVITVGDDSAALRASWLF 298


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 20/77 (25%), Positives = 30/77 (38%)
 Frame = -2

Query: 435 SESEHPTFHLVLSALPLECI*KPEARREEQSSPAVTEHGNSARRSG*GWTSNPKLRSGAR 256
           S + HP  H+ LS  PL+    P    +E  S AV+  G  +  +    +S P      +
Sbjct: 483 SPAVHPVIHIYLSRPPLQ----PAVSEQETPSEAVSREGTRSTDATMEDSSRPPSNGSFQ 538

Query: 255 RXVLRHARAEGLLFPQR 205
              + H    G    QR
Sbjct: 539 GPGITHLSEMGQRILQR 555


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 321 RAPSQRARTAPPSAPLV 371
           R PSQR R A PS P V
Sbjct: 493 RTPSQRGRVAVPSTPSV 509


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 756 LLIRFIS-RFLLSLYYFRCYEYFTV 827
           L + F++  +LL   Y  CYEYF V
Sbjct: 84  LCLTFVAFLYLLDRLYINCYEYFIV 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,064
Number of Sequences: 5004
Number of extensions: 58703
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)