Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0921
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0082 - 1182976-1182989,1183044-1183347,1184259-1184357,118...    29   3.4  
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389...    29   4.5  
04_04_1539 + 34243234-34243413,34243783-34243850,34244159-342442...    29   4.5  
11_06_0187 - 21029511-21029857,21031444-21031739,21032270-210323...    28   7.9  
08_01_1084 - 11120719-11120950,11121035-11121133,11122446-111228...    28   7.9  
05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948     28   7.9  
03_05_0429 - 24157060-24157671,24158000-24158468,24158679-241587...    28   7.9  

>09_01_0082 -
           1182976-1182989,1183044-1183347,1184259-1184357,
           1184458-1184595,1184698-1184820,1184962-1185030
          Length = 248

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +2

Query: 308 LALFPCSVTAGEDCSSLR--ASGFYIHSRGRADKTR 409
           L L PCS   G+ CSS R   +G Y  +     KTR
Sbjct: 15  LLLLPCSCQVGDSCSSARDCGAGLYCGNCAATGKTR 50


>07_01_0524 +
           3892340-3894625,3894995-3895109,3895204-3895298,
           3895929-3896167,3896524-3896610,3896967-3897066,
           3897908-3898115,3898224-3899422
          Length = 1442

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 372 KPEARREEQSSPAVTEHGNSARRSG*GWTSNPKLRSGARRXVLRH 238
           KP A  ++ S P++ +HG    R G  +T   KLR   +  +L +
Sbjct: 434 KPNAIDQDTSRPSLEKHGIKKERKGPRYTMKQKLRGQIKDILLNN 478


>04_04_1539 +
           34243234-34243413,34243783-34243850,34244159-34244274,
           34244400-34244514,34244601-34244799
          Length = 225

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
 Frame = +3

Query: 768 FISRFLLS---LYYFRCYEYFTV 827
           FIS FLLS   L+YF C  YFTV
Sbjct: 151 FISGFLLSALMLFYFSCLGYFTV 173


>11_06_0187 -
           21029511-21029857,21031444-21031739,21032270-21032345,
           21032714-21032836,21033200-21033228,21033823-21034328
          Length = 458

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 424 APHFPPGLVCPTPRVYIKTRGAEGGAVLARCDGARKQCETERLRLDQQ 281
           AP  PP  + P P    K  G   G+V     G ++Q + E  R+ +Q
Sbjct: 72  APMRPPAALLPMPAPKRKWEGQANGSVPGESSGRQQQQKPEEKRVAKQ 119


>08_01_1084 -
           11120719-11120950,11121035-11121133,11122446-11122849,
           11123559-11124197
          Length = 457

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 190 SALSPALREEQPFRPCVPKHGSSCSAS*LRIAGPASAAPSRTVSVLRHSGRGLLLPP 360
           SA SP   E  P  PC  +  SS +++ L  A  + AAP         +G  L+L P
Sbjct: 85  SAASPPAPESPPEAPCSTRLSSSLASAILAAASASPAAPPPVRDDGFDAGAELVLRP 141


>05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948
          Length = 508

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 267 FVASDCWSSLSRSVSHCFRAPSQRARTAPPSAPLV 371
           F A DC  +++  +    RAPS +  T P  +PLV
Sbjct: 5   FSARDCREAMTSPLRRKLRAPSPQTPTVPHISPLV 39


>03_05_0429 -
           24157060-24157671,24158000-24158468,24158679-24158752,
           24159231-24159280,24159368-24159449,24159526-24159575,
           24159666-24159708,24159804-24159884,24159988-24160033,
           24160151-24160197,24160358-24160423,24160701-24160767,
           24160913-24160998
          Length = 590

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -1

Query: 367 RGAEGGAVLARCDGARKQCETERLRLDQQSEATKRS 260
           +GA G A+L R    +K+   +++RL +Q++ T+RS
Sbjct: 12  KGAFGSALLVRHKVEKKKYVLKKIRLARQTDRTRRS 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,790,977
Number of Sequences: 37544
Number of extensions: 369416
Number of successful extensions: 965
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)