Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0921
         (829 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ...    30   2.2  
At5g65670.2 68418.m08261 auxin-responsive protein / indoleacetic...    29   5.0  
At5g65670.1 68418.m08260 auxin-responsive protein / indoleacetic...    29   5.0  
At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG sulfoquinovosylt...    28   6.6  

>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
           subunit-related contains similarity to Swiss-Prot:P80387
           5'-AMP-activated protein kinase, beta-1 subunit (AMPK
           beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
          Length = 591

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 255 FVLRFVASDCWSSLSRSVSHCFRAPSQRARTAPPSAPLVFIYTLGVGQTRPG-GKWG 422
           F  +F     W  L+R  S+ F++ +++   +PP +PLV +++  V    PG G+WG
Sbjct: 211 FSSKFFTPQGWKLLNRQ-SNSFQSGTKKNILSPPISPLVSVFSEDV----PGDGEWG 262


>At5g65670.2 68418.m08261 auxin-responsive protein / indoleacetic
           acid-induced protein 9 (IAA9) identical to SP|Q38827
           Auxin-responsive protein IAA9 (Indoleacetic acid-induced
           protein 9) {Arabidopsis thaliana}
          Length = 336

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 196 LSPALREEQPFRPCVPKHGSSCSAS 270
           LSPA  +E+PF P +P     CS+S
Sbjct: 87  LSPAKLDEKPFFPLLPSKDEICSSS 111


>At5g65670.1 68418.m08260 auxin-responsive protein / indoleacetic
           acid-induced protein 9 (IAA9) identical to SP|Q38827
           Auxin-responsive protein IAA9 (Indoleacetic acid-induced
           protein 9) {Arabidopsis thaliana}
          Length = 338

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 196 LSPALREEQPFRPCVPKHGSSCSAS 270
           LSPA  +E+PF P +P     CS+S
Sbjct: 87  LSPAKLDEKPFFPLLPSKDEICSSS 111


>At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG
           sulfoquinovosyltransferase / sulfolipid synthase (SQD2)
           identical to GI:20302857
          Length = 510

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 266 LRSFGLLVQPQPLRLALFPCSVTAGEDCSSLRASGFYIHS 385
           L S  L + P  L      CS ++   CS  R+S F +HS
Sbjct: 4   LSSINLSIPPHLLPSTTNTCSSSSATSCSPPRSSSFVLHS 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,372,278
Number of Sequences: 28952
Number of extensions: 296144
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)